Results for "toolkit"
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Next Generation Sequencing (NGS) Tutorials
...mputing-based pipeline for high-throughput analysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http...3469 days ago
- ...t end-users. For developers, the source code, building instructions and implementation/development resources are available on GitHub. The Picard toolkit is open-source under the MIT...
2909 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate...2531 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorith...2527 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (i...2503 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...icient and accurate analysis and management of large-scale genomic data. The overview section of the BEDOPS v2.4.26 documentation summarizes the toolkit, functionality and performanc...2500 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq*...1783 days ago
mojolicious: a next generation web framework for the Perl programming language.
...static file server, CGI/PSGI detection, first class Unicode support and much more for you to discover. A powerful web development toolkit, that you can use for all kin...2286 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualizatio...2218 days ago
Hapsembler: An Assembler for Highly Polymorphic Genomes
Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/2156 days ago
