Results for "toolkit"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ality control tool for high-throughput sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads pre-proc...C Bioinformatics 11(Suppl. 12):S4, 2010 Full Text The Genome Analysis Toolkit: a MapReduce framework for an...3769 days ago
List of bioinformatics open source projects/software.
...y-foundation-evolves-into-new-toolkit-net-bio.aspx A language-neutral bioinformatics toolkit built using the Microsoft 4.0...rogramming language) language toolkit Bioinformatics Learning Tuto...r omics data Genome Analysis Toolkit 1.0 (GATK 1.0) a software pa...3746 days ago
Perl one-liner for bioinformatician !!!
...ssive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.), t...3618 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...They have a couple modules to do so, and have enabled parts of the sra toolkit SolveBio Software pro...based on strings”; “BioR consists of two parts 1) the BioR toolkit which depends on Java…...2898 days ago
Awesome perl frameworks, libraries and software - PART 1
...powerful. abw/Template2 - Perl Template Toolkit v2 stf-storage/stf - ST...DK for Perl Programmers sveinbjornt/Data-URL-Toolkit - Various tools for work...active Extensions clone for Perl dams/curses-toolkit - Curses::Toolkit perl m...2479 days ago
Single Cell RNAseq data analysis tutorial !!
...rg/pbge/sincera.html SC3 – consensus clustering of single-cell RNA-Seq data http://biorxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing an...2340 days ago
Tools for bacterial whole genome annotation
...aces to this server and can be executed in an interactive mode. BlastKOALA is suitable for annotating fully sequenced genomes. PAGIT: Provides a toolkit for improving the quality of...2321 days ago
- ...cat infile.fq | awk '{if(NR%4==1) {printf(">%s\n",substr($0,2));} else if(NR%4==2) print;}' > file.fa FASTX-toolkit fastq_to_fasta is available in the FASTX-toolkit that scales really well with...
2295 days ago
List of visualization tools for genome alignments
...ntext of the sequence, and also its six-frame translation http://www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web toolkit for regional genomic sequence...2273 days ago
