Results for "toolkit"
Blogs
List of gene ontology software and tools
...ub.com/chrisamiller/davidapi GOEAST (Institute of Genetics and Developmental Biology, Chinese Academy of Sciences) GOEAST is web based software toolkit providing easy to use, visual...3694 days ago
Tools and Method for Haplotype phasing !
...TER: http://linkage.rockefeller.edu/soft/gh/ The Genome Analysis Toolkit: http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit IMPUTE2: https://mathge...1323 days ago
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...mputing-based pipeline for high-throughput analysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http...3472 days ago
- ...t end-users. For developers, the source code, building instructions and implementation/development resources are available on GitHub. The Picard toolkit is open-source under the MIT...
2913 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...ysis PAGIT 1.01 – Post Assembly Genome Improvement ToolkitPAGIT (Post Assembly Genome Improvement Toolkit) is a tools to generate autom...apsembler 2.21 – Haplotype-specific Genome Assembly ToolkitHapsembler is a haplotype...2670 days ago
Awesome perl frameworks, libraries and software - PART 2
...or handling GTFS (transit) data perigrin/xml-toolkit - Framework for Marshali...bw/Badger - Perl application programming toolkit abh/colobus - Perl NNTP...re Reporting API nferraz/Perl-Data-Warehouse-Toolkit - Make simple ETL and Da...2479 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ality control tool for high-throughput sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads pre-proc...C Bioinformatics 11(Suppl. 12):S4, 2010 Full Text The Genome Analysis Toolkit: a MapReduce framework for an...3764 days ago
List of bioinformatics open source projects/software.
...y-foundation-evolves-into-new-toolkit-net-bio.aspx A language-neutral bioinformatics toolkit built using the Microsoft 4.0...rogramming language) language toolkit Bioinformatics Learning Tuto...r omics data Genome Analysis Toolkit 1.0 (GATK 1.0) a software pa...3741 days ago
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Wire posts
News
Update Genome Workbench 2.7.15 released
...and retrieve BLAST results. Genome Workbench is built on the NCBI C++ ToolKit and uses cross-platform APIs...was developed entirely in-house at NCBI and makes use of the NCBI C++ ToolKit. The C++ ToolKit provides a c...3705 days ago
Bio-Scripts
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format) from the archive. fastq-dump is in the SRA toolkit. It allows directly downloadi...1544 days ago
- #More at https://developer.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&target_distro=Ubuntu&target_version=1804&target_type=deblocal $ wget https://...
1538 days ago
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Tags
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipelineTags: Bioinformatics, Computational Biology, Toolkit, Pipelines, Tools
2942 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submodule; http://htslib.org/)Fetching tardis git clone https://github.com/BilkentCompGen/tardis.git --recursive ...Tags: TARDIS, Toolkit, automated, rapid, discovery, structural, variants
2507 days ago
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Comments
Comment on "Coronavirus Resources !"
Illumina toolkit for SARS-CoV2 https://sapac.illumina.com/informatics/biological-interpretation/coronavirus-software.html#about946 days ago
- ...;across all samples into a single report. NGSQC NGSQC: cross-platform quality analysis pipeline for deep sequencing data. NGS QC Toolkit NGS QC Toolkit A toolkit for the qualit...
2122 days ago
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