Results for "tools"
Users
About me: I am new to Bioinformatics, and currently doing research at BHU. I am keen to learn new bioinformatics tools and techniques, and make some good friends.174 days ago
- Skills: ChIP-seq pipeline tools
3514 days ago
- +2 more Users
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...he search perl BioPerl Output will be like as follows: bioperl - Perl tools for computational molecular b...e perl moduleslibbio-perl-run-perl - BioPerl wrappers: moduleslibbio-samtools-perl - Perl interface to SamT...3939 days ago
Five unique traits of effective computational biologist
...ioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biologica...n programming — you must also be excited about your research, the tools and technology you are using,...3940 days ago
- +43 more Blogs
Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3935 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background...
3934 days ago
- +193 more Bookmarks
Files
- ...pen_format] Failed to open file temporarySamsamtools sort: can't open "temporarySa...a index...bwa index -p all_p_ctg.fa /home/urbe/Tools/OPERA-LG_v2.0.6/all_p_ctg.fa[...yDDrive/ONTdata/allONT/allONT.fasta /home/urbe/Tools/OPERA-LG_v2.0.6/all_p_ctg.fa...
2141 days ago
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
...predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of powerful tools and was easy to use, whereas...3941 days ago
- ...l distributions available for Windows platform, which confuse me at the begining. I google it and found that Strawberry comes with additional dev tools to compile CPAN modules if ne...
3905 days ago
Pages
Bio++ : C Language libraries for your biological need
...port for codon models (including non-homogenous models),Tools for manipulating Hidden Markov Models,Improved numerical tools (numerical derivatives, param...is supported!Mixed models (beta). Molecular evolution tools Parameter estimation under m...3937 days ago
BioRuby :Ruby packages for biologist
...y is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an i...3937 days ago
- +10 more Pages
Top-level pages
- ...logies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological...
3937 days ago
- ..., development, or application of computational tools and approaches for expanding...and (3) the development and implementation of tools that enable efficient access...Several layers of analysis with bioinformatics tools are necessary to arrive from...
3937 days ago
- +47 more Top-level pages
Wire posts
News
- RCSB PDB Sept'13 Release offers following new features: - New tools to search for drugs and drug targets- Improved interface for 3D visualisation using Jmol/JSmol- An update to the...
3884 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...bring together researchers in various domains of human health, agriculture, livestock and environment who are using advanced computational biology tools to solve scientific problems...3834 days ago
- +25 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...will require bioinformatics developments and implementation of methods for accommodating the high level of repetitiveness of complex genomes. The tools will be integrated into pipel...3938 days ago
- ...llular localization and interaction. These technologies produce large amounts of raw data that can be transformed into information by software and tools developed both in academia an...
3938 days ago
- +74 more Opportunity posts
ResearchLabs posts
- ...genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which causes malaria in humans, have provided new tools for discovery in biology and...
3937 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...tion Detection of cell type and stage active biological processes using molecular profiles Biological pathway and network databases and analysis tools Link @ http://baderlab.org...3937 days ago
- +16 more ResearchLabs posts
Video
Bioinformatics -- Understanding of living systems through information science
...has highlighted a research field called bioinformatics. In this new field, computers and techniques from information science are not just used as tools to advance life science resea...3906 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...haven't been well described. The nascent field of translational bioinformatics may help. Dr. Butte's lab at Stanford University builds and applies tools that convert more than 300 bi...3900 days ago
- +5 more Video
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1206 days ago
- ...CentOS system admins should run: sudo yum groupinstall -y 'Development Tools' sudo yum install -y expat-d...stall # Install dependencies for Ensembl API, VEP, OncoKB, and other tools we use here at MSKCC: curl -...
2134 days ago
- +37 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want...3520 days ago
Which of the followings are the best place to study Bioinformatics ?
...plosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques. Bioinformatics provides the tools to analyse and exploit such d...3406 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...biological problem and by using bioinformatics tools this can be easily achieved.&...ke this package is, it provides lots of useful tools for comprehensive analysis an...formatics company will be developing effective tools to eliminate manipulated data...2351 days ago
Groups
...s popularity has increased substantially in recent years with the availability of huge genomic data and biological packages. Bioconductor provides tools for the analysis and comprehe...3940 days ago
...tsumoto in Japan. BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, tools for structural biology, and o...3909 days ago
- +2 more Groups
Tags
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bioinformaticians are faced with dilemma when they receive biological sequence data for the first time. They mostly found confusin...Tags: Bioinformatics, Open Source, OBF, Tools, Software, Computational Biology
3697 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of an actual or theoretical physical/biological system, executing the model on a digital computer, and analyzing the execution output. Simulation embodies the principle of ``learning by doing'' --- to learn about the system we must first ...Tags: Bioinformatics, Simulations, Tools, Scripts, Softwares, Genetics, Biology, NGS, Evolution, Biological Processes
2964 days ago
- +19 more Tags
Comments
Comment on "Short-read assembly using Spades !"
...ases. This step can be performed using various tools such as Trimmomatic or FastQC...f the assembled genome. This can be done using tools such as QUAST or BUSCO. These...parameters used for SPAdes and the evaluation tools may vary depending on the spe...405 days ago
- There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART (short for A...
405 days ago
- +69 more Comments
