Results for "tools"

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  • Spines

    Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for ef...

    2971 days ago

  • NCBI Remap

    ...ilable through a simple web interface or you can use the API for NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www.ncbi.nlm.nih.gov/genome/tools/remap/docs/api

    2968 days ago

  • HiCdat

    ...ative studies. It uses simple input and output formats and can therefore easily be integrated into existing workflows or combined with alternative tools. More at http://bmcbioinform...

    2968 days ago

  • UCSC Genome Browser and Blat software !

    ...exception of items built from the following source code directories, which are freely available for all uses: - kent/src/utils (includes big* tools) - kent/src/lib - k...

    2962 days ago

  • scikit-learn

    Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html  

    2950 days ago

  • GA4GH Data Working Group

    ...oup (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global standards and tools for the secure, privacy respe...

    2930 days ago

  • Picard

    Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs...

    2891 days ago

  • REAPR: a universal tool for genome assembly evaluation

    ...also available, REAPR can combine this with the large insert library in order to score each base of the assembly. http://www.sanger.ac.uk/science/tools/reapr

    2913 days ago

  • HOMER: Software for motif discovery and next-gen sequencing analysis

    ...ial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as HOMER. Setting up...

    2894 days ago

  • YASS :: genomic similarity search tool

    ...eic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLA...

    2888 days ago