List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq,...pe based Input: BAM- uses BAMtools API to parse Reference genom...nput: pileupformat (Maq or Samtools) Output: SV-M Descri...and non-coding variants; Four tools: VAT (Variant annotation tool...2871 days ago
2877 days ago
Tools for Searching Repeats And Palindromic Sequences
...pean Molecular Biology Open Software Suite (EMBOSS) includes some basic tools for finding tandem repeats an...Nucleic:repeats). There are many on-line services providing the EMBOSS tools, for example: Wageningen B...2174 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...2/#191540 The advantage of using GeneSCF over other enrichment tools is that, it performs enrichme...and above) by accessing source databases. With command-line versions of tools, as you know you can run mult...2834 days ago
2831 days ago
Genome Assembly Tools and Software - PART1 !!
...for benchmarking DNA assembly tools, based on 3rd generation sequ...longer repeats than existing tools. The overall pipeline is show...that makes use of third party-tools and High Performance Computin...ted by polymorphism discovery tools. It can also facilitate data...2648 days ago
Awesome perl frameworks, libraries and software - PART 1
...Glacier skx/sysadmin-util - Tools for Linux/Unix sysadmins. pe...essions, macros, ... noxxi/p5-ssl-tools - various standalone per...tes on Simplenote tobert/perl-ssh-tools - A more capable DSH / c...eral useful documentary forms xen-tools/xen-tools - xen-tools is...2452 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...vironmental samples Web service http://taxonomer.iobio.io/ Other d2-tools Word-based (k-tuple) compari...mples from NGS reads Software (Python/R) https://code.google.com/p/d2-tools/ VirHostMatcher Prediction...2333 days ago
2313 days ago
Tools for bacterial whole genome annotation
...sequenced genomes. PAGIT: Provides a toolkit for improving the quality of genome assemblies created via an assembly software. PAGIT compiled four tools: (i) ABACAS which classifies...2294 days ago