Results for "tools"

Tags

  • TMAP - torrent mapping alignment program General Notes

    TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest TMAP is unsupported. To use a supported version, please see the TMAP version associat...

    Tags: Bioinformatics, Torrent, Mapping, Tools, TMAP

    2552 days ago

  • WGS Celera Assembler version 8.3rc2

    These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software.  The distribution is usable on most Unix-like platforms, and some platforms have pre-compiled binary distri...

    Tags: Bioinformatics, wgs-assembler, WGS, PBcR, Pacbio, Correct, Packages, Tools, Simulation, Fastq

    2544 days ago

  • Tools for bacterial whole genome annotation

    RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation (if you have only a few genomes to annotate). Pr...

    Tags: Tools, bacterial, whole, genome, annotation, prokaryotic, genes

    2294 days ago

  • Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes

    Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in multicellular eukaryotes. In order for a eukaryotic spec...

    Tags: Tools, detect, horizontal, gene, transfer, HGT, genomes

    812 days ago

  • d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.

    Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to create these network graphs from R. The main idea is that you should able to take an R data frame with information about the relat...

    Tags: Tools, D3, JavaScript, network, tree, dendrogram, Sankey, graphs, R

    2183 days ago

  • Tools to Predict the Impact of Missense Variants !

    Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large number of in silico tools have been employed for the task of pathogenicity prediction, including PolyPhen‐2, SIFT,...

    Tags: Evaluation, Tools, Predict, Missense, Variants, Hindered, Circularity

    2165 days ago

  • Binding Site Prediction in Protein !

    The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the intermolecular complex formed between two or more m...

    Tags: Binding, Site, Prediction, Protein, Bioinformatics, Interactions, Structure, Ligand, Bind, Tools, Server

    2164 days ago

  • Protein-Protein Interaction Sites Predictions !

    The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspects: The interaction partners of a specific protein and the amino acid residues participating in a given PPI. Information about a p...

    Tags: Protein, Interaction, Sites, Predictions, Tools, Servers

    2164 days ago

  • Ligand Docking Tools and Software !

    Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, focusing on free (at least for academic institutes) and/or popular docking tools.  AutoDock Stochastic ...

    Tags: Ligand, Docking, Tools, Software, Protein

    2164 days ago

  • Tools for Protein-Protein Docking !

    Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes. Following are the tools to predict the structu...

    Tags: Tools, Protein-Protein, Docking, Software, Protein, Prediction, Interation

    2164 days ago