Results for "transcriptome"

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  • BIGRE Lab

    The Laboratoire de Bioinformatique des Génomes et des Réseaux (Genome and Network Bioinformatics) is specialized in the conception, implementation, evaluation and application of bioinformatics approaches for the analysis of genome, transcriptome, proteome and metabolism. Our main activities incl...

    Tags: Bioinformatics, Computational Biology, Genomics, Belgium, Genome, Transcriptome, Proteome, Metabolism

    3785 days ago

  • KisSplice

    KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each...

    Tags: Bioinformatics, Analysis, NGS, KISSPLICE, Transcriptome, Assembler, Genome

    2782 days ago

  • Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

    Tags: RNA, Transcriptome, Assembly

    2096 days ago

  • gVolante: Completeness Assessment of Genome/Transcriptome Sequences

    A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section

    Tags: gVolante, Completeness, Assessment, Genome, Transcriptome, Sequences

    1902 days ago

  • gVolante: Completeness Assessment of Genome/Transcriptome Sequences

    gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.

    Tags: gVolante, Completeness, Assessment, Genome, Transcriptome, Sequences

    1696 days ago

  • Integrated mRNA and microRNA transcriptome analysis in Strand NGS

    Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA – mRNA interactions in regulatory networks.Read the application note on Integrated mRNA and microRNA transcripto...

    Tags: mRNA, miRNA, transcriptome, NGS data analysis, next generation sequencing, Strand NGS

    3160 days ago

  • Scallop: reference-based transcriptome assembler for RNA-seq

    Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and p...

    Tags: Scallop, reference-based, transcriptome, assembler, RNA-seq, Tools

    2152 days ago

  • ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly

    With increased availability of de novo assembly algorithms, it is feasible to study entire transcriptomes of non-model organisms. While algorithms are available that are specifically designed for performing transcriptome assembly from high-throughput sequencing data, they are very memory-intensiv...

    Tags: ASplice, scalable, memory-efficient, algorithm, de novo, transcriptome, assembly

    2096 days ago

  • ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

    ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo assembled RNA-seq data with the help of a Bloom filter that represents the k...

    Tags: ChopStitch, exon, annotation, splice, graph, transcriptome, assembly, whole, genome, sequencing

    2096 days ago

  • transrate: Understanding your transcriptome assembly

    Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and par...

    Tags: transrate, Understanding, transcriptome, assembly, rna-seq

    2086 days ago