Results for "variant"

Tags

  • You and your friend have similar DNA !!!

    New research out of Massachusetts claims that people often choose friends that are similar to them in genetics and they are more accurate than you might suppose. A study published on PNAS http://www.pnas.org/content/111/Supplement_3/10796.full found that people are apt to pick friends who ar...

    Tags: Bioinformatics, Computational Biology, Genetics, Analysis, Variant, Friends, MIT

    3532 days ago

  • The Genome 10K Project

    https://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approximately one for every vertebrate genus. The trajectory of cost reduction in DNA sequencing suggests that this project wi...

    Tags: Bioinformatics, Computational Biology, Genetics, Sequencing, G10K, Variant, Assembly, Animal

    3531 days ago

  • A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/15/2/256.short #NGS #Tools #Survey #Variant

    Tags: NGS, Tools, Survey, Variant

    3483 days ago

  • VirVarSeq: a low frequency Virus Variant detection pipeline http://bioinformatics.oxfordjournals.org/content/early/2014/08/31/bioinformatics.btu587.abstract #Pipeline #Variant #VirVarSeq

    Tags: Pipeline, Variant, VirVarSeq

    3483 days ago

  • A tool set for short variant discovery in genetic sequence data. http://genome.sph.umich.edu/wiki/Vt #Tool #VT #Variant

    Tags: Tool, VT, Variant

    3483 days ago

  • Variant Effect Predictor http://www.ensembl.org/Tools/VEP #Variant #Effect #Predictor

    Tags: Variant, Effect, Predictor

    2028 days ago

  • https://github.com/Ensembl/ensembl-vep #Variant #Effect #Predictor #Github

    Tags: Variant, Effect, Predictor, Github

    2028 days ago

  • Ensembl Variation - Calculated variant consequences

    For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of the variant may have on each transcript. The set of consequence terms, defined by the Sequence Ontology ...

    Tags: Ensembl, Variation, Calculated, variant, consequences, Variant, Effect, Predictor

    2028 days ago

  • Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data

    Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using th...

    Tags: Platypus, Haplotype-Based, Variant, Caller, Next, Generation, Sequence, Data, NGS, SNP

    1982 days ago

  • Variant calling workflow http://www.htslib.org/workflow/ #Variant #Calling #Tutorial

    Tags: Variant, Calling, Tutorial

    1982 days ago