Results for "variant analysis"
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under...ated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warni...2902 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2128 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for...alled.................................no. auto::coverage - Are coverage analysis tools installed...Negative re...1525 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...mbly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2111 days ago
- ...------------------- Coverage Analysis:...sequencing data. CollectVariantCallingMetrics (Picard)...ools that perform metagenomic analysis, e.g. microbial community com...---------------------- Short Variant Discovery:...
2063 days ago
- library(vcfR) # Input the files. vcf
2048 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail --------------------...ossibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...ossibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...2022 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git...inux-x86_64-2.7/fastafile.so cythoning cython/variant.pyx to cython/variant.c /home/urbe/anaconda3/envs/...ux-x86_64-2.7/cpopulation.so cythoning cython/variantF...2007 days ago
Setting up falconUnzip conda environments for genome assembly !
...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb-asse...e currently available SMRT(R) Analysis builds. While # # efforts ha...e currently available SMRT(R) Analysis builds. While # # efforts ha...1978 days ago
Pack a perl program with their dependencies on Ubuntu !
...als ... Biostatistics is an innovative field that involves the design, analysis, and interpretation of data...sembly github.com - SvABA is a method for detecting structural variants in sequencing data using geno...1499 days ago
