Results for "variant analysis"
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to ana...abbit hole and possibly never getting a solution. Learn to perform root cause analysis, learn enough about the under...3940 days ago
Five points for bioinformatics software/tools
...y spend time on computational analysis of huge amounts of data and t...UI software for computational analysis? Should I use commercial bioi...t from your computational and analysis work, most of the reviewer al...to accomplice your biological analysis work. This means that if you...3697 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that it...1136 days ago
- I bet, this website will be your best friend in near future. This helps us to explore...from it. You can find some useful open source bioinformatics codes for your analysis work. You can use the left ba...
3905 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour whic...jectionable to many consumers. Detected functional variant(s) underlying boar taint comp...ns on SSC5,13, and 7 with the aid of FreeBayes , a variant...3779 days ago
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3899 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3934 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing th...ised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3802 days ago
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Pages
Bio++ : C Language libraries for your biological need
...oinformatics, including sequence analysis,phylogenetics, molecular evo...ibraries are as follows:Sequence analysis Sequence and Site objects, w...ity distribution, allowing for invariant classes.Covarion models.Model...et of C++ libraries for sequence analysis, phylogenetics, molecular evo...3937 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing,...3937 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA se...the fast growing HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequenc...
3937 days ago
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "T...to provide raw data for later analysis. Once the raw data are availa...of protein domains. Combined analysis of structural and genomic dat...
3937 days ago
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Wire posts
News
- PhylomeDB is a public database for complete collectio...gy and paralogy predictions which are based on the analysis of the phylogenetic trees. Th...aims at providing a high-quality phylogenetic analysis of different genomes , i...
3908 days ago
- In current era, we are handling huge amount of genomics data, and analysing it to mak...iological sense out of it. Large-scale sequence studies requiring BLAST-based analysis produce huge amounts of data...
3879 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagshi...tection of polymorphisms including structural variants, of the comparison of multipl...tational facilities and expertise in NGS data analysis, and will benefit as well fro...3938 days ago
- ...e first challenge in the project will be to identify which of the many variants in these genomes have functi...equisite for this position. Experience with high throughput sequencing analysis methods, machine learning, pr...
3938 days ago
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ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our l..., with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3938 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics...pedigrees Investigation of DNA sharing in distantly related individuals CNV analysis in pedigrees and connections...
3937 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from...3891 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming...ction strain Bacillus subtilis. Until now, genome analysis could only be done in nationa...t-generation sequencer development has made genome analysis possible in an ordinary lab....3906 days ago
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Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under...ated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warni...2904 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2130 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a prog...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3520 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3516 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at th...ed genome, transcriptome, proteome, and metabolome analysis to reveal the molecular profi...it provides lots of useful tools for comprehensive analysis and comparison of high-throug...2351 days ago
Groups
R is a free software programming language and a software e...iners for developing statistical software and data analysis. R's popularity has increased...ical packages. Bioconductor provides tools for the analysis and comprehension of high-thr...3940 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of t...3897 days ago
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Tags
- Live webinar on Analysis of Variants using GeneSpring GX 14.9 on 6th Dec at 8 AM PSTVariant analysis workflow in GeneSpring GX is designed for detection, management and analysis of genetic variants such as single nucleotide polymorphisms (SNPs) and InDels. The webinar showcases SNP data analysis ...
Tags: Agilent, Strand, variant analysis, Genespring
2352 days ago
Comments
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy&n...babilistic framework for structural variant discovery. [ paper-2014&...sp;] manta – Structural variant and indel caller for mapped se...1132 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...iple technologies to generate variant calls and regions for use in benchmarking and validating variant calling pipelines. Currently,...r benchmarking germline small variantsPosters and Presentations by G...il Lists:General announcementsAnalysis Team Blog about GIAB Work1549 days ago
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