Results for "variant calling"
Top-level pages
An algorithm is a computable set of steps to achieve a desired result. We use algorithm...hem.The binary search algorithm is an example of a variant of divide and conquer called...bly by using the simplex algorithm. A complex variant...3929 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...e package] Comparing genomes and assemblies; variant detection Versatile and ope...al, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference sequ...formatics 26(6):722-9, 2010. Full Text vipR: variant identification in pooled DNA...3762 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modifi...p://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for sc...exchange. Database of annotations aboute sequence variant...3739 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...esearch.ca/labs/tillier/software.htm#3SimRare Rare variant simulation and analysis tool...f the introduction and evolution of (rare) genetic variant...3720 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of the...line for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for identifying DNA b...3607 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference asse...for ChIP-Seq, until I get time to update this list. Alternate Base Calling Rolexa - R-based framework for base calling of Solexa data. Project publi...3501 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequen...iations (CNVs), and loss of heterozygosity (LOH) events Quickly find variants of interest by filtering variant...3524 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference a...or ChIP-Seq, until I get time to update this list. Alternate Base Calling * Rolexa - R-based framework for base calling of Solexa data. Project publi...3225 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...utations, can perform variant calling at chrX; Input: VCF Output:...AM files, run through variant calling programs to generate intermed...ogram; SNV caller for somatic variants in “low cellularity ca...tion: Large-scale Analysis of Variants in noncoding Annotations; Ne...2891 days ago
- ...ntifying and filtering genomics variants. bowtie: widely used, open...fers to the original Phred base-calling software, which first used an...ates into higher confidence for calling genomic variants. RNAME: reference genome id...ntifying and filtering genomics variants. Created by Heng Li, current...
2852 days ago
