Results for "variants"
Bio-Scripts
...t analyze read coverage to detect copy number variants. AnnotateIntervals...(BETA Tool) Calls copy-number variants in germline samples given the...form variant calling and genotyping for short variants (SNPs, SNVs and Indels)...2059 days ago
Samtools commands for bioinformatician !
...files samtools index sal_sej_sorted.bam.bam ### identifying genome variants (mpileup command) # -g : out...calling snp and indels # -c : find snp # -v : output only potential variants bcftools view -c -v sal_vars...1587 days ago
Pack a perl program with their dependencies on Ubuntu !
...Jit 6 days ago SvABAStructuralvariationindeldetectionlocalassembly github.com - SvABA is a method for detecting structural variants in sequencing data using geno...1495 days ago
Create random 10000 SNPs in genome !
...ating output files .. Generating the correspondance map for genomic variants introduced during simulation:...fseq2simseq.map.txt Generating reference-based vcf file for genomic variants introduced during simulation:...1195 days ago
Create random 1000 INDEL in genome !
...ating output files .. Generating the correspondance map for genomic variants introduced during simulation:...fseq2simseq.map.txt Generating reference-based vcf file for genomic variants introduced during simulation:...1195 days ago
Create random 1000 CNVs in genome !
...ating output files .. Generating the correspondance map for genomic variants introduced during simulation:...fseq2simseq.map.txt Generating reference-based vcf file for genomic variants introduced during simulation:...1195 days ago
Create random 5 inversions in genome !
...ating output files .. Generating the correspondance map for genomic variants introduced during simulation:...fseq2simseq.map.txt Generating reference-based vcf file for genomic variants introduced during simulation:...1195 days ago
Create random 2 translocations in genome !
...ating output files .. Generating the correspondance map for genomic variants introduced during simulation:...fseq2simseq.map.txt Generating reference-based vcf file for genomic variants introduced during simulation:...1195 days ago
Installing Covid19 Environment !
...3/envs/covid19-genepi/opt/krona/taxonomy ktUpdateTaxonomy.sh \ The default QUAST package does not include: * GRIDSS (needed for structural variants detection) * SILVA 16S rRNA...907 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan we si...807 days ago
