Results for "variants"
Blogs
How many variants of "omics" techniques presently in use ?3929 days ago
Computer simulation of genetic mechanism !!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariants SUP SLINK/FastSL...2959 days ago
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Bookmarks
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out how the identifie...3801 days ago
- ...tutorial In this tutorial we cover the concepts of detecting small variants (SNVs and indels) in human ge...s its input a BAM file of aligned reads and generates a list of likely variants in VCF format Pipelines are...
3637 days ago
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Files
- 1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference: https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf
2782 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...0 – Detection and Assembly of Insertion VariantsMindTheGap is a software...forms detection and assembly of DNA insertion variants in NGS read datasets with res...oftware uses a simple error correction, viral variants assembling based on maximum-b...2670 days ago
Top-level pages
List of bioinformatics open source projects/software.
...-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for sci...ertise and knowledge exchange. Database of annotations aboute sequence variants with clinically relevant info...3741 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariantsSUP SLINK/FastSLINK utility pr...3721 days ago
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Wire posts
News
- ...richment for indels in children affected by autism, compared with their unaffected siblings, a pattern that persisted even after excluding common variants.
3531 days ago
- ...ome method was missing more than 40 percent of disease-causing genetic variants, and we found that the worst-performing method missed more than 90 percent of such variants in four of the 56 genes," he...
3610 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...rotein expression and phenotypic adaptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison of multipl...3933 days ago
- ...e outcomes of experimental evolution will be correlated with phenotypes. The first challenge in the project will be to identify which of the many variants in these genomes have functio...
3933 days ago
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ResearchLabs posts
- Scientific Interests: Models and software for predicting who is at risk of carrying genetic variants that confer susceptibility to cancer. Application to breast, ovarian, colorectal...
3864 days ago
- ...nvicta (PNAS 2011) 2. discovered that a fundamental social trait in this species (how many queens are accepted in the colony) is determined by variants of a social chromosome (Natur...
3543 days ago
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Video
- ...alterations of the regulation of specific growth-promoting genes, population-genetic features that affect the fitness trajectories of growth rate variants in evolving populations, and...
3857 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...n which it has developed. These technologies identify the millions of variants present in normal individuals...oped approaches to efficiently and accurately computationally identify variants. More recently, the analyti...3855 days ago
Bio-Scripts
- ...t analyze read coverage to detect copy number variants. AnnotateIntervals...(BETA Tool) Calls copy-number variants in germline samples given the...form variant calling and genotyping for short variants (SNPs, SNVs and Indels)...
2060 days ago
Samtools commands for bioinformatician !
...files samtools index sal_sej_sorted.bam.bam ### identifying genome variants (mpileup command) # -g : out...calling snp and indels # -c : find snp # -v : output only potential variants bcftools view -c -v sal_vars...1587 days ago
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Groups
...ou even realising. By taking a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that help determine your susc...3937 days ago
Tags
- A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencing data sets. Scalpel, which is open source and available for download on SourceForge, outperformed the popular tools GATK HaplotypeCaller and ...
Tags: Bioinformatics, Scalpel, Genetic, Variants, Discovery, Tool
3531 days ago
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Comments
Comment on "Coronavirus Resources !"
...Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Vari...rsting piece of information https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-info.html945 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the n...1028 days ago
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