Results for "variation"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...nce sequence of a gene of interest] Detecting and annotating genetic variations using the HugeSeq pipeline....t al, Genome Res 20(9):1297-303, 2010. PubMedCentral A framework for variation discovery and genotyping usin...3769 days ago
Commercial and public next-gen-seq (NGS) software
...Linux/Alpha. SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string sear...; and easy visualization of putative single nucleotide and structural variation. From the Sanger Centre. MapV...3509 days ago
Apps for Busy Bioinformatics Researchers !!!
...OSMIC containing cell lines can be queried for mutations. Copy Number Variation (CNV) plots from cell lines p...oses. Visualize whole human genome sequencing data including small variations, copy number variations (CNV...3531 days ago
Software packages for next gen sequence analysis
...inux/Alpha. * SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string sear...; and easy visualization of putative single nucleotide and structural variation. From the Sanger Centre. * Ma...3232 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...data Golden Helix: SNP and Variation Suite used for managing, a..., manage, curate, report genomic variation Has own data library -- data...mechanisms through which genetic variation affects phenotype.”; no...background prevalence of exonic variation in the Phase 3 1000 Genomes d...2898 days ago
- ...ymer Uninterrupted stretch of a single nucleotide type (e.g., TTT or GGGGGG) InDel InDel stands for Insertion or deletion. A form of structural variation in which a DNA segment is eit...
2859 days ago
Genome Assembly Tools and Software - PART1 !!
...ome and aligned paired-end reads to the assembled sequence. Structure variation and mis-assembly can be detec...to scaffolds. laSV 1.0.2 – Local Assembly based Structural Variation Discovery tool laSV is a s...2675 days ago
Quick next generation sequencing (NGS) terms definition
...bution. Therefore, if the read depth over a certain region deviates significantly from this distribution, it signals for a potential copy number variation (CNV).2512 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...as the "hairlessness" of whales is a derived state for one subclade within the Mammalia. diversity -- Term used to describe numbers of taxa, or variation in morphology. evoluti...2452 days ago
List of visualization tools for genome alignments
...s and easy visualization of putative single nucleotide and structural variation http://lookseq.sourceforge.n...sp; Visualization of short read alignment, identification of genetic variation and association with annotati...2273 days ago
