Results for "view"

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  • GenomeComp

    GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It can be easily used to compare, parsi...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, GenomeComp

    2596 days ago

  • sockeye

    This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D model...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, sockeye, 3D

    2596 days ago

  • Can you recommend me some interactive tools to visualize chromosomes?

    I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to explore well. Help Please...

    Tags: Bioinformatics, Visualize, Chromosome, See, View, Genome, Tools

    2596 days ago

  • J-Circos

    Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom in/out functions. J-Circos uses the Java computer ...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos

    2596 days ago

  • Laj: viewing and manipulating the output from pairwise alignment programs

    Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing addi...

    Tags: Bioinformatics, Laj, View, Alignment, Lastz

    2584 days ago

  • bedtools

    Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one tointersect, merge, count,&...

    Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM

    2590 days ago

  • Krona

    Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive charts are self-contained and can be viewed with a...

    Tags: Bioinformatics, NGS, Reads, Krona, Visualization, View, Plot, Graph

    2564 days ago

  • Lifemap

    Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning.  The current tree contains ALL species present in NCBI ...

    Tags: Bioinformatics, Lifemap, Tree, Phylogeny, Taxonomy, Draw, View, Zoom, See, France, Interactive

    2545 days ago

  • Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt #Linux #Tricks #View #Grep

    Tags: Linux, Tricks, View, Grep

    2522 days ago

  • http://loupe.10xgenomics.com #10XGenomics #10X #Phase #Haplotype #View

    Tags: 10XGenomics, 10X, Phase, Haplotype, View

    2018 days ago