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Comment on "Short-read assembly using Spades !"
...t, PacBio, and Oxford Nanopore sequencing platforms. Here is a brief overview of how to use SPAdes for shor...ontigs. The contigs will be saved in a file named contigs.fasta. You can view the contigs using a text edit...405 days ago
Comment on "Elgg Installation steps !"
Useful for debugging https://stackoverflow.com/questions/43094726/your-password-does-not-satisfy-the-current-policy-requirements https://elgg.org/discussion/view/1945994/elgg-requires-the-php-extension-gd591 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Journal of Integrative Bioinformatics https://www.degruyter.com/view/journals/jib/jib-overview.xml?tab_body=overview1206 days ago
Comment on "Sibelia: A comparative genomics tool"
..."Sibelia" plots only blocks obtained after the last stage. You can also view blocks at the intermediate st...ter: -g or --graphfile If you are a curious person, you can also view condensed de Bruijn graph tha...1269 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output The ou...for browsing is GMAJ, which provides a reference-based stand-alone viewer for MAF files. java -jar g...1270 days ago
Comment on "SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator"
Another nice simulation tool https://bioinformaticsonline.com/bookmarks/view/40302/simug-a-general-purpose-genome-simulator1386 days ago
Comment on "BINC (BioInformatics National Certification) Website address"
BINC 2018 http://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-20182189 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...m which to start processing data. [0] -n, --numreads INT Number of reads to process per batch. Value of '-1' processes all reads. [-1] -h, --help - View this help. [false] Debug opt...2277 days ago
Comment on "Download assemblies from NCBI"
User can also download with script http://bioinformaticsonline.com/snippets/view/33321/download-the-genome-from-ncbi-using-bash-scriptcommand2514 days ago
Comment on "List of Bioinformatics and Computational Biology Journals"
Thanks for the extensive list, I also have local list of journals. I paste here for the bioinformatics community. Hope helpful. Advances and Applications in Bioinform...2599 days ago
