Results for "viewer"

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  • Genome Context Viewer (GCV)

    The Genome Context Viewer (GCV) is a web-app that visualizes genomic context data provided by third party services. Specifically, it uses functional annotations as a unit of search and comparison. By adopting a common set of annotations, data-store operators can deploy federated instances of GCV,...

    Tags: Genome, Context, Viewer, GCV, Visualization

    312 days ago

  • In search of a good genome browser/viewer

    I have reference sequeces (in fasta format) and alignment files (small RNA reads from 4 different conditions aligned to genome in SAM/BAM/BED/BEDgraph format) as input files. I'm interested in comaparing the alignments of different conditions. So, I'm looking for a good genome viewer which can al...

    Tags: alignment, viewer, genome browser

    3141 days ago

  • Dot, an interactive viewer for genome-genome comparison

    Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics.  Dot supports the output of MUMmer’s nucmer aligner the most commonly used software method for alig...

    Tags: Dot, interactive, viewer, genome-genome, comparison

    2265 days ago

  • MGcV: the microbial genomic context viewer for comparative genome analysis

    MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box by selecting the type of identifier and pasting identifiers (one per line) or b...

    Tags: MGcV, microbial, genomic, context, viewer, comparative, genome, analysis

    2250 days ago