Tags: Genome, Context, Viewer, GCV, Visualization
312 days ago
In search of a good genome browser/viewer
I have reference sequeces (in fasta format) and alignment files (small RNA reads from 4 different conditions aligned to genome in SAM/BAM/BED/BEDgraph format) as input files. I'm interested in comaparing the alignments of different conditions. So, I'm looking for a good genome viewer which can al...Tags: alignment, viewer, genome browser
3141 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner the most commonly used software method for alig...Tags: Dot, interactive, viewer, genome-genome, comparison
2265 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box by selecting the type of identifier and pasting identifiers (one per line) or b...Tags: MGcV, microbial, genomic, context, viewer, comparative, genome, analysis
2250 days ago