Results for "virus"

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  • QuasiModo - Quasispecies Metric Determination on Omics

    This repository contains the scripts and pipeline that reproduces the results of the HCMV benchmarking study. In this study we evaluated genome assemblers and variant callers on 10 in vitro generated, mixed strain HCMV sequence samples, each consisting of two lab strains in different abundance ra...

    Tags: QuasiModo, Quasispecies, Metric, Determination, Omics, Virus, Genome, Variant, Assembly, SNP

    1006 days ago

  • Corona Virus Literature !

    LitCovid is a curated literature hub for tracking up-to-date scientific information about the 2019 novel Coronavirus. It is the most comprehensive resource on the subject, providing a central access to 201482 (and growing) relevant articles in PubMed. The articles are upd...

    Tags: Corona, Virus, Literature, Disease, Viruses

    837 days ago

  • MPXV Bookmarks

    MPVX infection across the globe https://www.cdc.gov/poxvirus/monkeypox/response/2022/world-map.html

    Tags: MPXV, Virus, Globe, Infection

    466 days ago

  • Sequencing Solutions to World Health

    "New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies

    Tags: Sequencing, virus, pathogen, health, medicine

    3864 days ago

  • Coronavirus Resources !

    2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. It also incorporates a wide range of relevant information including scientific literatures, news, and popular articles for science disse...

    Tags: Corona, virus, China, Resources, CoVID, covid, china, genome, assembly, dna, rna, sequences, evolution, study, comparative, genomics

    1422 days ago

  • Coronavirus SARS-CoV-2

    Used Nanographics Vj, our real-time molecular visualization and animation software, to create this video showing the structure of the virus. In the video, you can see the latest theory on how the RNA is organized inside of the virus particle. On this page, you can download high resolution i...

    Tags: 3dCoronavirus, SARS-CoV-2, corona, virus, 3D, NanoGraphics

    1381 days ago

  • IVA: accurate de novo assembly of RNA virus genomes

    IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly variable depth from RNA virus samples. We tested IVA on datasets from 140 sequenced samples from human immunodeficiency virus-1 or influenza-virus-infected people and demonstrated that IVA outperforms all oth...

    Tags: iva, virus, assembly, genome, RNA

    1010 days ago

  • Calling variants in non-diploid systems

    The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true low frequency variants. Some of the early attempts to do this well have been accomplished on human mitochondrial DNA a...

    Tags: Variant, Prokaryotic, virus, genome, snp, tutorial, galaxy

    1006 days ago

  • fastv - detect virus

    fastv is an ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. It detects microbial sequences from FASTQ data, generates JSON reports and visualizes the result in HTML reports. This tool can be used to detect viral infectious diseases, like COVID-19. This to...

    Tags: virus, detect, fast, identification

    839 days ago

  • Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome

    LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus (monkeypox) ORGANISM Monkeypox virus ...

    Tags: Monkeypox, virus, isolate, MPXV_USA_2022_MA001, complete, genome

    612 days ago