Results for "visualization"
Blogs
Computational Proteomics : Lets remember the basics
...spend some of my valuable time in computational drug designing sector. I remember my initial proteomics days, playing with interactive protein visualization software and dreaming big. Fo...3470 days ago
List of bioinformatics workflow management tools !
...lar open-source, web-based platform for data intensive biomedical research. Has several features, from data analysis to workflow management to visualization tools. [ paper-2018 ...1125 days ago
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Bookmarks
A Brief Bioinformatics Tutorial
..., how to perform a multiple alignment of the homologues you've selected and how to edit this alignment. The Structure part is about molecular visualization, homology modeling and struct...3620 days ago
Software developed in pevsner lab
...SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze...3482 days ago
- +94 more Bookmarks
Files
- ...an ambitious doctorate student in bioinformatics for a project aimed at developing novel algorithms for data integration and the analysis and visualization of mass spectrometry data in...
3811 days ago
Pages
Awesome perl frameworks, libraries and software - PART 3
...spencertipping/js-in-ten-minutes - JavaScript in Ten (arbitrarily long) Minutes kazeburo/GrowthForecast - Lightning Fast Graphing/Visualization qooob/authentic-theme -...2477 days ago
Awesome perl frameworks, libraries and software - PART 4
...rting into a "Junior" sized planner. ccurtsinger/stabilizer - Stabilizer: Rigorous Performance Evaluation zrlram/afterglow - graph visualization tool utcompling/OpenNLP-Mode...2477 days ago
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Top-level pages
- ...ses: Circos to create concise, explanatory, unique and print-ready visualizations of your data: Genomics and...bsp;Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the...
3925 days ago
Useful Links for Bioinformaticians
...Exploring Distant Protein Sequence Relationships Sequence Analysis tutorial The Sequence and Structure Searching Site Flexible Information Visualization of Multivariate Data from Bio...3113 days ago
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Wire posts
News
- ...e collections of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and mul...
3902 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...tion, reads counting, data preprocessing, gene set test, to pathway visualization in about 40 lines of codes. T...nks, and feed the results into GAGE/Pahview for pathway analysis or visualization. All these workflows are impl...3816 days ago
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Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...plus tuition fees at the EU students rate) is available for four years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. R...3899 days ago
PostDocs positions in computer science in HELSINKI, FINLAND
...roup) Statistical machine learning (Statistical Machine Learning group) Analysing ubiquitous sensor data (HIIT-Wide Focus Area) Interactive visualization (HIIT-Wide Focus Area) Affec...3877 days ago
- +9 more Opportunity posts
ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...ired by mutations to cause disease. This work is supported through the development of open-source biological pathway and network databases and visualization and analysis software. Predi...3931 days ago
BC Cancer Agency Genome Sciences Centre
Research Area Genome analysis, genome visualization, mutation detection, molecular docking, comparative genomics, cancer informatics Link @ http://www.bcgsc.ca3931 days ago
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Video
Des Higgins: Visualizing Multiple Sequence Alignments
...://www.bioinf.ucd.ie) gives a very entertaining introduction to the visualization of multiple sequence alignmen...://www.vizbi.org) funded by NIH & EMBO. For information about data visualization efforts at the Broad Institut...3704 days ago
Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #P...1084 days ago
Bash script to convert SAM to BAM visualization ready
samtools view -bS file.sam | samtools sort - file_sorted samtools index test_sorted.bam test_sorted.bai2166 days ago
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Tags
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short reads is usually highly memory-intensive, only a few assemblers, best suited for your assembly. For the sake of computational me...Tags: Bioinformatics, Genome, NGS, Assembly, Tools, Visualization
2669 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads to a change of state in the cell. Pathways come ...Tags: Comprehensive, list, visualization, tools, biological, pathways
2270 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...an interactive diagram (see section "d3" visualization"). The blocks are also can be...ized with "Circos" (see section "Circos" visualization"). While "Circos" is better f...the file "blocks_sequences.sam". "d3" visualization ------------------ File nam...1268 days ago
- ...A, BED files or Chromosome size file (two-column, plain text file). Visualization can be performed by genome br...sers like UCSC, IGB and IGV. However, R scripts can also be used to visualization. SAMStat SAMStat i...
2120 days ago
- +10 more Comments
