Results for "visualization"

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  • Genome Workbench 2.10.7

    Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View. For the full list of features, improvements and fixes, see the release notes:https://ncbi.nlm.nih.gov/tools/gbench/releasenotes New Features BLAST Tool: added s...

    Tags: Bioinformatics, Analysis, Visualization, Genome, Workbench, BLAST, Tree View.

    603 days ago

  • Machine Learning !!!

    In machine learning, computers apply statistical learning techniques to automatically identify patterns in data. These techniques can be used to make highly accurate predictions. Keep scrolling. Using a data set about homes, we will create a machine learning model to distinguish h...

    Tags: Bioinformatics, Analysis, Visualization, R, Statistics, Learn, Machine Learning

    603 days ago

  • Bioinformatics tools and software

    USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW.  UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...

    Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software

    599 days ago

  • Fancy Oneliner for Bioinformatics !!

    This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...

    Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics

    597 days ago

  • vcfR

    Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format for this data. The format of these files and their content is discussed in the vignette ‘vcf data.’ These files ...

    Tags: Bioinformatics, Analysis, NGS, vcfR, R, Visualization, VCF, Genome

    554 days ago

  • Ribbon !!

    Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary changes, and a number of other relationships. However, most of the information in read-to-reference or genome-genome alignments is lost for ...

    Tags: Bioinformatics, Analysis, NGS, Visualization, Genome, Rearrangement, Ribbon

    492 days ago

  • Genome Assembly Tools and Software - PART1 !!

    The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short reads is usually highly memory-intensive, only a few assemblers, best suited for your assembly. For the sake of computational me...

    Tags: Bioinformatics, Genome, NGS, Assembly, Tools, Visualization

    424 days ago

  • iTOL: interactive Tree Of Life

    Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees...

    Tags: Bioinformatics, Tree, Phylogeny, Visualization, iTOL

    389 days ago

  • Best way to visualize high-dimensional data. https://www.quora.com/Whats-the-best-way-to-visualize-high-dimensional-data #Visualization #Plot #HighDimention #R

    Tags: Visualization, Plot, HighDimention, R

    366 days ago

  • Krona

    Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive charts are self-contained and can be viewed with a...

    Tags: Bioinformatics, NGS, Reads, Krona, Visualization, View, Plot, Graph

    340 days ago