Tags: Bioinformatics, Analysis, Visualization, Genome, Workbench, BLAST, Tree View.
2828 days ago
Tags: Bioinformatics, Analysis, Visualization, R, Statistics, Learn, Machine Learning
2828 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software
2824 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics
2822 days ago
Tags: Bioinformatics, Analysis, NGS, vcfR, R, Visualization, VCF, Genome
2779 days ago
Tags: Bioinformatics, Analysis, NGS, Visualization, Genome, Rearrangement, Ribbon
2716 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short reads is usually highly memory-intensive, only a few assemblers, best suited for your assembly. For the sake of computational me...Tags: Bioinformatics, Genome, NGS, Assembly, Tools, Visualization
2649 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees...Tags: Bioinformatics, Tree, Phylogeny, Visualization, iTOL
2614 days ago
Tags: Bioinformatics, NGS, Reads, Krona, Visualization, View, Plot, Graph
2564 days ago