Results for "visualization"


  • This is the documentation of the #circlize package. #Circular #Visualization #R

    Tags: circlize, Circular, Visualization, R

    270 days ago

  • I-PV: Interactive Protein Sequence Visualization

    I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout?

    Tags: I-PV, Interactive, Protein, Sequence, Visualization

    237 days ago

  • Circular Visualization in R

    This is the documentation of the circlize package. Examples in the book are generated under version 0.4.1. If you use circlize in your publications, I would be appreciated if you can cite: Gu, Z. (2014) circlize implements and enhances circular visualization in R. Bioinforma...

    Tags: Circular, Visualization, R

    235 days ago

  • ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

    ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single comm...

    Tags: ETE3, Reconstruction, Analysis, Visualization, Phylogenomic, Data

    6 days ago

  • Comprehensive list of visualization tools for biological pathways

    The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads to a change of state in the cell. Pathways come ...

    Tags: Comprehensive, list, visualization, tools, biological, pathways

    26 days ago

  • Circleator

    The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool developed at the Institute for Genome Sciences in the University of Maryland's School of Medicine. Circleator produces circular plots of genome-associated data, like this one: Common uses of the to...

    Tags: Circleator, Perl, visualization, tool

    245 days ago

  • Mulan: MUltiple sequence Local AligNment and conservation visualization tool

    Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It combines refine and tba tool...

    Tags: Mulan, MUltiple, sequence, Local, AligNment, conservation, visualization, tool

    220 days ago

  • poRe: an R package for the visualization and analysis of nanopore sequencing data

    Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a s...

    Tags: poRe, R, package, visualization, analysis, nanopore, sequencing, data

    94 days ago

  • Bandage: interactive visualization of de novo genome assemblies

    Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to specific areas of the graph and interact with it by moving nodes, adding labels, changing colors and extracting sequ...

    Tags: Bandage, interactive, visualization, de novo, genome, assemblies

    83 days ago

  • Harvest: a suite of core-genome alignment and visualization tools

    Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive ...

    Tags: Harvest, alignment, visualization, intraspecific, microbial, genomes, recombination, detection, phylogenetic, trees

    79 days ago