Results for "visualization"
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HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a look at the examples and documentation for a description of the ways that it can be configured to explore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. Th...Tags: HiGlass, tool, exploring, genomic, contact, matrices, tracks, Visualization
2145 days ago
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
NAViGaTOR – Network Analysis, Visualization, & Graphing TORonto is a software system for scaleable visualizing and analyzing networks. The current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output options, brings new network views and analysis algorit...Tags: NAViGaTOR, Network, Analysis, Visualization, Graphing, Toronto
2123 days ago
- The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling an...
Tags: RAVEN, Reconstruction, Analysis, Visualization, Metabolic, Networks, Toolbox, software, suite, Matlab, semi-automated, reconstruction, genome-scale, models, GEMs
2010 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).For more information about IGB, visit http://bioviz.org.Source code for the project was hosted here for many years. In ...Tags: GenoViz, Visualization, software, genomics, chromosomes
1940 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated interaction data maintained by the BioGRID. Osprey is developed by the TyersLab and is a pa...Tags: Osprey, Network, Visualization, System
1922 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as the number of elements in the aggregates ...Tags: UpSetR, R, Package, Visualization, Intersect, Properties
1914 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addit...Tags: chromoMap, R, package, Interactive, Visualization, Annotation, Chromosomes
1840 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the chromosome plot.Each chromosome is composed of loci(representing a specific range determined based on ...Tags: chromoMap, R, Interactive, Visualization, Annotation, Chromosomes
1692 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use Juicebox on the web. Detailed documentation is available on the wiki. Instructions below pertain pri...Tags: Juicebox, Visualization, analysis, software, Hi-C, data
1525 days ago
