Results for "visualize"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...thologous.html) SyntenyMiner is being developed as an application to visualize and interrogate comparisons a...contain synteny regions between two or more genomes and interactively visualize the synteny between them. GSV...2594 days ago
Bioinformatics PhDs - Cover Letter
...about doing some research so you can speak in more specific terms about how you would fit into and enhance the department's offerings. Help them visualize how you would strengthen them...3350 days ago
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Bookmarks
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of...elements. In general, it is possible to use PhyloGrapher to visualize any type of relations between...2934 days ago
- ...visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and K...
2863 days ago
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Files
Applied Statistics for Bioinformatics using R
...book is to give an introduction into statistics in order to solve some problems of bioinformatics. Statistics provides procedures to explore and visualize data as well as to test biolo...2059 days ago
Top-level pages
- ...aches for expanding the use of biological, medical, behavioral or health data, including those to acquire, store, organize, archive, analyze, or visualize such data." - NIH Bioinformat...
3931 days ago
Next generation sequencing in R or bioconductor environment
...ture data to various genome browsers and file formats (such as GFF). See the Small RNA Profiling exercise for an example of using rtracklayer to visualize alignment coverage. Documenta...3608 days ago
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Wire posts
Opportunity posts
- ...this biological information does not equal biological knowledge. As biology becomes large-scale, new methods have to be developed to integrate, visualize and query the large amounts o...
3932 days ago
3 days intensive course on Understanding 'omics data in Basel, Switzerland, 19-21st November
...-on sessions will be performed using the Genedata Expressionist® software, which enables participants to quickly apply the discussed methods and visualize results. No previous knowledg...3861 days ago
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ResearchLabs posts
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
...elop web-based applications that integrate data across domains to facilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their data. Such integration...1337 days ago
Bio-Scripts
Download genome using NCBI esearch command line !
...efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda install -c bioconda fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using...1085 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse com...1085 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...icobacter_pylori.fasta Synteny blocks are visualized with an interactive diagram...visualization"). The blocks are also can be visualized with "Circos" (see section...sualization ---------------------- You can visualize synteny blocks with a colorfu...1269 days ago
- The Database for Annotation, Visualization and Integrated Discovery (DAVID ) are able to visualize genes on BioCarta & KEGG pathway maps. Other options for pathway-mining such as g...
3485 days ago
