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  • BioPerl to convert between sequence formats from Fasta to Genbank

BioPerl to convert between sequence formats from Fasta to Genbank

  • Public
By Anjana 2879 days ago
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->newFh('-file' => "$inFile" , '-format' => 'Fasta'); $out = Bio::SeqIO->newFh('-format' => 'Genbank'); print $out $_ while <$in>;