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  • BioScripts
  • Jit
  • Unzip all the genome file and remove all fasta header except first one

Unzip all the genome file and remove all fasta header except first one

  • Public
By Jit 24 days ago
#!/bin/bash gzip -d *.gz FILES=$(pwd)/* for f in $FILES do echo "Processing $f file..." if [[ $f =~ \.fna$ ]]; then awk ' /^>/ && FNR > 1 {next} {print $0} ' $f | sed '/^>/{s/ /_/g}' > $f.fa #then sed '1!{/^\>/d;}' $f > $f.fa else echo "this file is not right file" fi #cat $f done