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The Wire
#sed
Wire posts tagged with 'sed'
Jit
@jit.aber
Thread
By
Jit
754 days ago
sed -i 's/2019/2020/g' test.txt test2.txt test3.txt
#Find
#Replace
#sed
BioStar
@biostar
Thread
By
BioStar
1337 days ago
Enter newline at the end of the file $ sed -i -e '$a\' file
#NewLine
#Sed
#Line
#New
Aaryan Lokwani
@aaryan
Thread
By
Aaryan Lokwani
2129 days ago
Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa
#fasta
#otherthanATGC
#replace
#sed
#Linux
#illegal
Surabhi Chaudhary
@surabhi
Thread
By
Surabhi Chaudhary
2329 days ago
Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa
#sed
#unwanted
#illegal
#remove
#correct
#fasta
#linux
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2467 days ago
Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa
#fasta
#header
#sed
Jit
@jit.aber
Thread
By
Jit
2491 days ago
Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt
#Remove
#Sed
#Text
Jit
@jit.aber
Thread
By
Jit
2498 days ago
Append the string to fasta header. $ sed 's/>.*/&_Bacteria/' foo.in > out.fasta
#Sed
#Fasta
#String
#Append
Jit
@jit.aber
Thread
By
Jit
2517 days ago
Filter
#blank
#lines
from a
#fasta
file using sed. $ sed '/^$/d' finalSample.fa > finalSample_filtered.fa
#Linux
#Filter
#FASTA
#SED
Jit
@jit.aber
Thread
By
Jit
2556 days ago
To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa
#Sed
#Clean
#Header
#Fasta
Jit
@jit.aber
Thread
By
Jit
2579 days ago
Add ">" in front of ids. sed -e 's/^/prefix/' file
#Sed
#Add
#>
Jit
@jit.aber
Thread
By
Jit
2595 days ago
#Remove
all line that start with # file: $ sed '/^#/ d' filename
#line
#sed
#linux