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The Wire
#size
Wire posts tagged with 'size'
LEGE
@lege
Thread
By
LEGE
1612 days ago
#Estimate
the
#insert
#size
with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'
Neelam Jha
@neelam
Thread
By
Neelam Jha
1651 days ago
List all files by size in Linux $ ls -l -S | sort -k 5 -n
#Linux
#Size
#List
BioStar
@biostar
Thread
By
BioStar
2018 days ago
Check the file systems and sizes. $ df --block-size=G
#Linux
#Size
#df
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2088 days ago
du -sh * | sort | grep "G"
#List
size of all the directory
#Size
#List
#Directory
#Linux
Aaryan Lokwani
@aaryan
Thread
By
Aaryan Lokwani
2133 days ago
Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai
#Fasta
#Index
#Length
#Count
#Size
#Samtools
Jit
@jit.aber
Thread
By
Jit
2260 days ago
Estimate the genome size
https:/
/
bioinformatics.uconn.edu/
genome-size-estimation-tutorial/
#Genome
#Size
#Estimate
Neelam Jha
@neelam
Thread
By
Neelam Jha
2457 days ago
Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa
#Reformat
#Fasta
#Size
Jit
@jit.aber
Thread
By
Jit
2480 days ago
#Filter
out
#reads
with
#size
to discard reads containing many Ns. BBNorm (
https:/
/
sourceforge.net/
projects/
bbmap/
)
Jit
@jit.aber
Thread
By
Jit
2485 days ago
Split the file in Linux with size. $ split --bytes=50M aaaa.fa
#split
#linux
#size
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2490 days ago
To know the size of the directory in current folder. $ du -sh *
#Size
#Directory
#List
#Space
#Linux
#du
Jit
@jit.aber
Thread
By
Jit
2788 days ago
Find a file with certain size and delete them: $ find . -name "see-D-d-ALN_*" -size -10k -delete
#Delete
#Size
#Linux
#Tricks
Jit
@jit.aber
Thread
By
Jit
2802 days ago
du -sh * will give you the size of all the directories,files etc in current directory in human readable format.
#Linux
#Size
#Tricks
#Folders
#Files