<![CDATA[BOL: All site questions]]> https://bioinformaticsonline.com/answers/?offset=20 https://bioinformaticsonline.com/answers/view/42879/alienomics-environment-is-inconsistent-error Mon, 15 Feb 2021 23:18:54 -0600 https://bioinformaticsonline.com/answers/view/42879/alienomics-environment-is-inconsistent-error <![CDATA[Alienomics "environment is inconsistent" error ?]]> $ conda install -c jnarayan81 alienomics

The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:

- defaults/linux-64::jupyter==1.0.0=py37_7
  - defaults/noarch::pygments==2.5.2=py_0
  - defaults/noarch::jupyter_console==6.1.0=py_0
  - defaults/linux-64::spyder==4.0.1=py37_0
  - defaults/linux-64::bleach==3.1.0=py37_0
  - defaults/noarch::pytest-astropy==0.8.0=py_0
  - defaults/linux-64::scikit-learn==0.22.1=py37hd81dba3_0
  - defaults/linux-64::conda-build==3.18.11=py37_0
  - defaults/linux-64::nbconvert==5.6.1=py37_0
  - defaults/noarch::jupyterlab_server==1.0.6=py_0
  - defaults/noarch::qtconsole==4.6.0=py_1
  - defaults/noarch::flask==1.1.1=py_0
  - defaults/linux-64::anaconda==2020.02=py37_0
  - defaults/noarch::autopep8==1.4.4=py_0
  - defaults/linux-64::ipykernel==5.1.4=py37h39e3cac_0
  - defaults/linux-64::jsonschema==3.2.0=py37_0
  - defaults/linux-64::pytest-arraydiff==0.3=py37h39e3cac_0
  - defaults/linux-64::sympy==1.5.1=py37_0
  - defaults/linux-64::anaconda-client==1.7.2=py37_0
  - defaults/linux-64::pylint==2.4.4=py37_0
  - defaults/noarch::conda-verify==3.4.2=py_1
  - defaults/noarch::numpydoc==0.9.2=py_0
  - defaults/linux-64::ipython==7.12.0=py37h5ca1d4c_0
  - defaults/linux-64::astropy==4.0=py37h7b6447c_0
  - defaults/linux-64::spyder-kernels==1.8.1=py37_0
  - defaults/noarch::backports.functools_lru_cache==1.6.1=py_0
  - defaults/linux-64::clyent==1.2.2=py37_1
  - defaults/linux-64::pytest-remotedata==0.3.2=py37_0
  - defaults/noarch::jinja2==2.11.1=py_0
  - defaults/noarch::ipywidgets==7.5.1=py_0
  - defaults/linux-64::python-language-server==0.31.7=py37_0
  - defaults/noarch::jupyterlab==1.2.6=pyhf63ae98_0
  - defaults/linux-64::_ipyw_jlab_nb_ext_conf==0.1.0=py37_0
  - defaults/linux-64::matplotlib==3.1.3=py37_0
  - defaults/noarch::networkx==2.4=py_0
  - defaults/linux-64::flake8==3.7.9=py37_0
  - defaults/noarch::prompt_toolkit==3.0.3=py_0
  - defaults/linux-64::anaconda-navigator==1.9.12=py37_0
  - defaults/noarch::nbformat==5.0.4=py_0
  - defaults/noarch::pytest-astropy-header==0.1.2=py_0
  - defaults/noarch::joblib==0.14.1=py_0
  - defaults/noarch::seaborn==0.10.0=py_0
  - defaults/linux-64::distributed==2.11.0=py37_0
  - defaults/noarch::pytest-openfiles==0.4.0=py_0
  - defaults/linux-64::isort==4.3.21=py37_0
  - defaults/linux-64::wheel==0.34.2=py37_0
  - defaults/linux-64::bokeh==1.4.0=py37_0
  - defaults/linux-64::numba==0.48.0=py37h0573a6f_0
  - defaults/linux-64::conda==4.9.0=py37_0
  - defaults/noarch::dask==2.11.0=py_0
  - defaults/linux-64::nose==1.3.7=py37_2
  - defaults/noarch::anaconda-project==0.8.4=py_0
  - defaults/linux-64::notebook==6.0.3=py37_0
  - defaults/linux-64::widgetsnbextension==3.5.1=py37_0
  - defaults/linux-64::matplotlib-base==3.1.3=py37hef1b27d_0
  - defaults/noarch::pytest-doctestplus==0.5.0=py_0
  - defaults/linux-64::astroid==2.3.3=py37_0
  - defaults/linux-64::scikit-image==0.16.2=py37h0573a6f_0

]]> LEGE https://bioinformaticsonline.com/answers/view/42679/how-much-do-bioinformatics-earn Wed, 27 Jan 2021 00:33:57 -0600 https://bioinformaticsonline.com/answers/view/42679/how-much-do-bioinformatics-earn <![CDATA[How much do bioinformatics earn?]]> How much a bioinformatician is being paid ?

]]> BioJoker https://bioinformaticsonline.com/answers/view/42678/which-country-is-best-for-bioinformatics Wed, 27 Jan 2021 00:33:00 -0600 https://bioinformaticsonline.com/answers/view/42678/which-country-is-best-for-bioinformatics <![CDATA[Which country is best for bioinformatics?]]> Where to study bioinformatics ?

]]> BioJoker https://bioinformaticsonline.com/answers/view/42677/does-bioinformatics-have-a-future Wed, 27 Jan 2021 00:32:07 -0600 https://bioinformaticsonline.com/answers/view/42677/does-bioinformatics-have-a-future <![CDATA[Does bioinformatics have a future?]]> Does bioinformatics have any future. Why not computer science ? 

]]> BioJoker https://bioinformaticsonline.com/answers/view/42676/is-computational-biology-a-good-field Wed, 27 Jan 2021 00:30:56 -0600 https://bioinformaticsonline.com/answers/view/42676/is-computational-biology-a-good-field <![CDATA[Is Computational Biology a good field?]]> I wam wondering about computational biology field. Is this is a good field of study?

]]> BioJoker https://bioinformaticsonline.com/answers/view/42675/what-does-a-computational-biologist-do Wed, 27 Jan 2021 00:29:10 -0600 https://bioinformaticsonline.com/answers/view/42675/what-does-a-computational-biologist-do <![CDATA[What does a computational biologist do?]]> What does the bioinformatician or computational biologist do ? 

]]> BioJoker https://bioinformaticsonline.com/answers/view/42598/how-to-resolve-the-error-uuidh-no-such-file-or-directory Sun, 10 Jan 2021 20:12:15 -0600 https://bioinformaticsonline.com/answers/view/42598/how-to-resolve-the-error-uuidh-no-such-file-or-directory <![CDATA[How to resolve the error "uuid.h: No such file or directory"]]> I receive following error while compiling kent

../inc/uuid.h:8:10: fatal error: uuid/uuid.h: No such file or directory
#include <uuid/uuid.h>
^~~~~~~~~~~~~
compilation terminated.
../inc/common.mk:420: recipe for target 'uuid.o' failed
make[1]: *** [uuid.o] Error 1
make[1]: Leaving directory '/home/simuG/ancestral/GenomeAlignmentTools/kent/src/lib'
makefile:7: recipe for target 'topLibs' failed
make: *** [topLibs] Error 2

]]> Neel https://bioinformaticsonline.com/answers/view/42481/how-hifi-reads-different-from-traditional-pacbio-long-reads Sat, 26 Dec 2020 08:03:05 -0600 https://bioinformaticsonline.com/answers/view/42481/how-hifi-reads-different-from-traditional-pacbio-long-reads <![CDATA[How HiFi Reads Different from Traditional PacBio Long Reads ?]]> Trying to understand HiFi reads, any link could help ...

]]> Shruti Paniwala https://bioinformaticsonline.com/answers/view/42376/how-does-mcscanx-classify Sat, 12 Dec 2020 20:01:13 -0600 https://bioinformaticsonline.com/answers/view/42376/how-does-mcscanx-classify <![CDATA[How does MCScanX classify ?]]> MCScanX classify genes into five categories, singletons, dispersed, proximal, tandem, and segmental. I am wondering the details definition of these ...

]]> Radha Agarkar https://bioinformaticsonline.com/answers/view/42288/makefile820-recipe-for-target-test-dynamic-failed Fri, 30 Oct 2020 23:39:53 -0500 https://bioinformaticsonline.com/answers/view/42288/makefile820-recipe-for-target-test-dynamic-failed <![CDATA[Makefile:820: recipe for target 'test_dynamic' failed]]> While installing XML::DOM::XPath

I got the following error

Makefile:820: recipe for target 'test_dynamic' failed

How to fix it ?

]]> Shruti Paniwala