<![CDATA[BOL: All site questions]]> https://bioinformaticsonline.com/answers/?offset=30 https://bioinformaticsonline.com/answers/view/42214/looking-for-databases-for-exome-resources Tue, 06 Oct 2020 20:43:22 -0500 https://bioinformaticsonline.com/answers/view/42214/looking-for-databases-for-exome-resources <![CDATA[Looking for databases for exome resources !]]> Shruti Paniwala https://bioinformaticsonline.com/answers/view/41705/samtool-error-open-fail-to-open-file-outbam Sat, 23 May 2020 05:32:51 -0500 https://bioinformaticsonline.com/answers/view/41705/samtool-error-open-fail-to-open-file-outbam <![CDATA[samtool error: open: fail to open file out.bam]]> samtools sort -o out.bam in.bam
open: No such file or directory
[bam_sort_core] fail to open file out.bam

]]> BioStar https://bioinformaticsonline.com/answers/view/41681/when-to-use-bbmap Mon, 18 May 2020 07:05:16 -0500 https://bioinformaticsonline.com/answers/view/41681/when-to-use-bbmap <![CDATA[When to use bbmap ?]]> I recently came across bbmap. When to use it ?

]]> biogeek https://bioinformaticsonline.com/answers/view/41594/error-mate-does-not-occur-next-to-it-in-your-bam-file-how-to-fix-it Sat, 02 May 2020 05:58:55 -0500 https://bioinformaticsonline.com/answers/view/41594/error-mate-does-not-occur-next-to-it-in-your-bam-file-how-to-fix-it <![CDATA[error: mate does not occur next to it in your BAM file. How to fix it ?]]> *****WARNING: Query v300043428L4C001R0481272249 is marked as paired, but its mate does not occur next to it in your BAM file.  Skipping.

]]> biogeek https://bioinformaticsonline.com/answers/view/41588/how-to-filter-out-host-reads-from-paired-end-fastq-files Tue, 28 Apr 2020 12:54:59 -0500 https://bioinformaticsonline.com/answers/view/41588/how-to-filter-out-host-reads-from-paired-end-fastq-files <![CDATA[How to filter out host reads from paired-end fastq files?]]> How to filter out host reads from paired-end fastq files?

]]> Neel https://bioinformaticsonline.com/answers/view/41419/no-library-found-for-lstaden-read Fri, 13 Mar 2020 01:22:32 -0500 https://bioinformaticsonline.com/answers/view/41419/no-library-found-for-lstaden-read <![CDATA[No library found for -lstaden-read]]> How to fix this warning, it occurs while installing AutoConTAMPR dependencies

Warning (mostly harmless): No library found for -lstaden-read

]]> biogeek https://bioinformaticsonline.com/answers/view/41176/how-to-create-a-linux-os-bootable-drive Wed, 19 Feb 2020 06:52:51 -0600 https://bioinformaticsonline.com/answers/view/41176/how-to-create-a-linux-os-bootable-drive <![CDATA[How to create a Linux OS bootable drive ?]]> Surabhi Chaudhary https://bioinformaticsonline.com/answers/view/41000/error-could-not-find-dictionary-next-to-reference-file-file Wed, 12 Feb 2020 06:08:43 -0600 https://bioinformaticsonline.com/answers/view/41000/error-could-not-find-dictionary-next-to-reference-file-file <![CDATA[Error: Could not find dictionary next to reference file file]]> htsjdk.samtools.SAMException: Could not find dictionary next to reference file file:///data/sata_data/workshop/wsu29/Parivartan/snakemake_germline_legacy/references/GRCh38.primary_assembly.genome.fa

]]> Rahul Nayak https://bioinformaticsonline.com/answers/view/40979/how-to-calculate-illumina-read-length Mon, 10 Feb 2020 23:48:58 -0600 https://bioinformaticsonline.com/answers/view/40979/how-to-calculate-illumina-read-length <![CDATA[How to Calculate Illumina Read Length ?]]> Hi, I wanted to know how to calculate illumina read length 

]]> Neel https://bioinformaticsonline.com/answers/view/40908/how-to-check-the-line-begin-with-in-a-file-using-raku-lang Wed, 05 Feb 2020 14:38:06 -0600 https://bioinformaticsonline.com/answers/view/40908/how-to-check-the-line-begin-with-in-a-file-using-raku-lang <![CDATA[How to check the line begin with ">" in a file using Raku lang ?]]> How to check if the line begin with "#" or ">" etc in Raku aka perl6

]]> Rahul Nayak