<![CDATA[BOL: Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error]]> https://bioinformaticsonline.com/answers/view/30365/why-megamerge-terminated-with-minimusfasta-1devnull-2devnull-failed-error? https://bioinformaticsonline.com/answers/view/30365/why-megamerge-terminated-with-minimusfasta-1devnull-2devnull-failed-error Fri, 23 Dec 2016 14:11:00 -0600 https://bioinformaticsonline.com/answers/view/30365/why-megamerge-terminated-with-minimusfasta-1devnull-2devnull-failed-error <![CDATA[Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error]]> I am trying to merge contigs, generated from different assemblies with MeGAMerge, but it failed after running few hour !! Following are the error I got on command prompt. Any suggestions??

perl MeGAMerge-1.1.pl -f MergedDIR allContigs_MIRA_assembled.fa
Running Newbler assembly with 308261 sequences
runAssembly -force -large -rip -mi 98 -ml 80 -pairt -cpu 4 -a 200 -o MergedDIR/newbler MergedDIR/newblerIn.fasta 1>/dev/null 2>/dev/null
Running Minimus2 with 331388 sequences
minimus2 -D CONSERR=0.06 -D MINID=98 -D OVERLAP=80 MergedDIR/minimus.fasta 1>/dev/null 2>/dev/null
minimus2 -D CONSERR=0.06 -D MINID=98 -D OVERLAP=80 MergedDIR/minimus.fasta 1>/dev/null 2>/dev/null failed:
Died at MeGAMerge-1.1.pl line 283.

]]> Neel