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	<title><![CDATA[BOL: How to activate in Conda? error: The above line should NO LONGER be in your ~/.bashrc file!]]></title>
	<link>https://bioinformaticsonline.com/answers/view/37940/how-to-activate-in-conda-error-the-above-line-should-no-longer-be-in-your-bashrc-file?</link>
	<atom:link href="https://bioinformaticsonline.com/answers/view/37940/how-to-activate-in-conda-error-the-above-line-should-no-longer-be-in-your-bashrc-file?" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/answers/view/37940/how-to-activate-in-conda-error-the-above-line-should-no-longer-be-in-your-bashrc-file</guid>
	<pubDate>Thu, 18 Oct 2018 03:54:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/answers/view/37940/how-to-activate-in-conda-error-the-above-line-should-no-longer-be-in-your-bashrc-file</link>
	<title><![CDATA[How to activate in Conda? error: The above line should NO LONGER be in your ~/.bashrc file!]]></title>
	<description><![CDATA[<p>➜ OligoMiner git:(master) conda create --name probeMining numpy scipy biopython scikit-learn<br />Solving environment: done</p><p>## Package Plan ##</p><p>environment location: /home/urbe/anaconda3/envs/probeMining</p><p>added / updated specs: <br /> - biopython<br /> - numpy<br /> - scikit-learn<br /> - scipy</p><p><br />The following packages will be downloaded:</p><p>package | build<br /> ---------------------------|-----------------<br /> numpy-1.15.2 |py27_blas_openblashd3ea46f_1 4.2 MB conda-forge<br /> python-2.7.15 | h33da82c_4 13.6 MB conda-forge<br /> reportlab-3.5.9 | py27h77bcf2c_0 2.5 MB conda-forge<br /> scikit-learn-0.20.0 |py27_blas_openblasha84fab4_201 13.5 MB conda-forge<br /> biopython-1.68 | py27_0 2.5 MB bioconda<br /> certifi-2018.10.15 | py27_1000 138 KB conda-forge<br /> msgpack-python-0.5.6 | py27h2d50403_3 101 KB conda-forge<br /> libpng-1.6.35 | ha92aebf_2 305 KB conda-forge<br /> blas-1.1 | openblas 1 KB conda-forge<br /> libtiff-4.0.9 | he6b73bb_2 521 KB conda-forge<br /> openblas-0.2.20 | 8 17.0 MB conda-forge<br /> mmtf-python-1.0.2 | py27_0 34 KB bioconda<br /> scipy-1.1.0 |py27_blas_openblash7943236_201 39.4 MB conda-forge<br /> olefile-0.46 | py_0 31 KB conda-forge<br /> pillow-5.3.0 | py27hc736899_0 603 KB conda-forge<br /> ------------------------------------------------------------<br /> Total: 94.3 MB</p><p>The following NEW packages will be INSTALLED:</p><p>biopython: 1.68-py27_0 bioconda <br /> blas: 1.1-openblas conda-forge<br /> ca-certificates: 2018.10.15-ha4d7672_0 conda-forge<br /> certifi: 2018.10.15-py27_1000 conda-forge<br /> freetype: 2.9.1-h6debe1e_4 conda-forge<br /> jpeg: 9c-h470a237_1 conda-forge<br /> libffi: 3.2.1-hfc679d8_5 conda-forge<br /> libgcc-ng: 7.2.0-hdf63c60_3 conda-forge<br /> libgfortran: 3.0.0-1 conda-forge<br /> libpng: 1.6.35-ha92aebf_2 conda-forge<br /> libstdcxx-ng: 7.2.0-hdf63c60_3 conda-forge<br /> libtiff: 4.0.9-he6b73bb_2 conda-forge<br /> mmtf-python: 1.0.2-py27_0 bioconda <br /> msgpack-python: 0.5.6-py27h2d50403_3 conda-forge<br /> ncurses: 6.1-hfc679d8_1 conda-forge<br /> numpy: 1.15.2-py27_blas_openblashd3ea46f_1 conda-forge [blas_openblas]<br /> olefile: 0.46-py_0 conda-forge<br /> openblas: 0.2.20-8 conda-forge<br /> openssl: 1.0.2p-h470a237_1 conda-forge<br /> pillow: 5.3.0-py27hc736899_0 conda-forge<br /> pip: 18.1-py27_1000 conda-forge<br /> python: 2.7.15-h33da82c_4 conda-forge<br /> readline: 7.0-haf1bffa_1 conda-forge<br /> reportlab: 3.5.9-py27h77bcf2c_0 conda-forge<br /> scikit-learn: 0.20.0-py27_blas_openblasha84fab4_201 conda-forge [blas_openblas]<br /> scipy: 1.1.0-py27_blas_openblash7943236_201 conda-forge [blas_openblas]<br /> setuptools: 40.4.3-py27_0 conda-forge<br /> sqlite: 3.25.2-hb1c47c0_0 conda-forge<br /> tk: 8.6.8-ha92aebf_0 conda-forge<br /> wheel: 0.32.1-py27_0 conda-forge<br /> xz: 5.2.4-h470a237_1 conda-forge<br /> zlib: 1.2.11-h470a237_3 conda-forge</p><p>Proceed ([y]/n)? y</p><p><br />Downloading and Extracting Packages<br />numpy-1.15.2 | 4.2 MB | ##################################### | 100% <br />python-2.7.15 | 13.6 MB | ##################################### | 100% <br />reportlab-3.5.9 | 2.5 MB | ##################################### | 100% <br />scikit-learn-0.20.0 | 13.5 MB | ##################################### | 100% <br />biopython-1.68 | 2.5 MB | ##################################### | 100% <br />certifi-2018.10.15 | 138 KB | ##################################### | 100% <br />msgpack-python-0.5.6 | 101 KB | ##################################### | 100% <br />libpng-1.6.35 | 305 KB | ##################################### | 100% <br />blas-1.1 | 1 KB | ##################################### | 100% <br />libtiff-4.0.9 | 521 KB | ##################################### | 100% <br />openblas-0.2.20 | 17.0 MB | ##################################### | 100% <br />mmtf-python-1.0.2 | 34 KB | ##################################### | 100% <br />scipy-1.1.0 | 39.4 MB | ##################################### | 100% <br />olefile-0.46 | 31 KB | ##################################### | 100% <br />pillow-5.3.0 | 603 KB | ##################################### | 100% <br />Preparing transaction: done<br />Verifying transaction: done<br />Executing transaction: done<br />#<br /># To activate this environment, use<br />#<br /># $ conda activate probeMining<br />#<br /># To deactivate an active environment, use<br />#<br /># $ conda deactivate</p><p>➜ OligoMiner git:(master) conda activate probeMining</p><p><br />CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.<br />If your shell is Bash or a Bourne variant, enable conda for the current user with</p><p>$ echo ". /home/urbe/anaconda3/etc/profile.d/conda.sh" &gt;&gt; ~/.bashrc</p><p>or, for all users, enable conda with</p><p>$ sudo ln -s /home/urbe/anaconda3/etc/profile.d/conda.sh /etc/profile.d/conda.sh</p><p>The options above will permanently enable the 'conda' command, but they do NOT<br />put conda's base (root) environment on PATH. To do so, run</p><p>$ conda activate</p><p>in your terminal, or to put the base environment on PATH permanently, run</p><p>$ echo "conda activate" &gt;&gt; ~/.bashrc</p><p>Previous to conda 4.4, the recommended way to activate conda was to modify PATH in<br />your ~/.bashrc file. You should manually remove the line that looks like</p><p>export PATH="/home/urbe/anaconda3/bin:$PATH"</p><p>^^^ The above line should NO LONGER be in your ~/.bashrc file! ^^^</p><p>&nbsp;</p>]]></description>
	<dc:creator>Aaryan Lokwani</dc:creator>
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