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	<title><![CDATA[BOL: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte]]></title>
	<link>https://bioinformaticsonline.com/answers/view/38017/unicodedecodeerror-utf-8-codec-cant-decode-byte-0x8b-in-position-1-invalid-start-byte?</link>
	<atom:link href="https://bioinformaticsonline.com/answers/view/38017/unicodedecodeerror-utf-8-codec-cant-decode-byte-0x8b-in-position-1-invalid-start-byte?" rel="self" type="application/rss+xml" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/answers/view/38017/unicodedecodeerror-utf-8-codec-cant-decode-byte-0x8b-in-position-1-invalid-start-byte</guid>
	<pubDate>Fri, 26 Oct 2018 04:10:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/answers/view/38017/unicodedecodeerror-utf-8-codec-cant-decode-byte-0x8b-in-position-1-invalid-start-byte</link>
	<title><![CDATA[UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte]]></title>
	<description><![CDATA[<p>whatshap phase -o seeWhat.vcf --reference genome.fa see.vcf genome.fa.sorted.bam</p><blockquote><p>This is WhatsHap 0.17 running under Python 3.6.6<br />Traceback (most recent call last):<br /> File "/home/anaconda3/bin/whatshap", line 11, in &lt;module&gt;<br /> load_entry_point('whatshap==0.17', 'console_scripts', 'whatshap')()<br /> File "/home/anaconda3/lib/python3.6/site-packages/whatshap/__main__.py", line 83, in main<br /> module.main(args)<br /> File "/home/anaconda3/lib/python3.6/site-packages/whatshap/phase.py", line 1089, in main<br /> run_whatshap(**vars(args))<br /> File "/home/anaconda3/lib/python3.6/site-packages/whatshap/phase.py", line 580, in run_whatshap<br /> out_file=output, tag=tag)<br /> File "/home/anaconda3/lib/python3.6/site-packages/whatshap/vcf.py", line 478, in __init__<br /> self._reader = vcf.Reader(filename=in_path)<br /> File "/home/anaconda3/lib/python3.6/site-packages/vcf/parser.py", line 300, in __init__<br /> self._parse_metainfo()<br /> File "/home/anaconda3/lib/python3.6/site-packages/vcf/parser.py", line 317, in _parse_metainfo<br /> line = next(self.reader)<br /> File "/home/anaconda3/lib/python3.6/site-packages/vcf/parser.py", line 280, in &lt;genexpr&gt;<br /> self.reader = (line.strip() for line in self._reader if line.strip())<br /> File "/home/anaconda3/lib/python3.6/codecs.py", line 321, in decode<br /> (result, consumed) = self._buffer_decode(data, self.errors, final)<br />UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte</p></blockquote><p>&nbsp;</p><p>How to fix this error ?&nbsp;</p>]]></description>
	<dc:creator>Neel</dc:creator>
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