https://bioinformaticsonline.com/answers/view/40468/how-to-fix-the-following-error-while-compiling-mcscanx? https://bioinformaticsonline.com/answers/view/40468/how-to-fix-the-following-error-while-compiling-mcscanx Mon, 23 Dec 2019 14:14:54 -0600 https://bioinformaticsonline.com/answers/view/40468/how-to-fix-the-following-error-while-compiling-mcscanx detect_collinear_tandem_arrays.cc:286:17: note: suggested alternative: 'getpt'
     while ((c = getopt(argc, argv, "g:b:c:o:")) != -1)
                 ^~~~~~
                 getpt
detect_collinear_tandem_arrays.cc:291:32: error: 'optarg' was not declared in this scope
             sprintf(gpath,"%s",optarg);
                                ^~~~~~
detect_collinear_tandem_arrays.cc:291:32: note: suggested alternative: 'opath'
             sprintf(gpath,"%s",optarg);
                                ^~~~~~
                                opath
detect_collinear_tandem_arrays.cc:307:17: error: 'optopt' was not declared in this scope
             if (optopt!='g' || optopt!='b' || optopt!='c' ||optopt!='o')
                 ^~~~~~
detect_collinear_tandem_arrays.cc:307:17: note: suggested alternative: 'getpt'
             if (optopt!='g' || optopt!='b' || optopt!='c' ||optopt!='o')
                 ^~~~~~
                 getpt
make: *** [makefile:6: mcscanx] Error 1
(base) ➜  MCScanx git:(master) ✗ ls

]]> Shruti Paniwala