https://bioinformaticsonline.com/answers/view/41594/error-mate-does-not-occur-next-to-it-in-your-bam-file-how-to-fix-it? https://bioinformaticsonline.com/answers/view/41594/error-mate-does-not-occur-next-to-it-in-your-bam-file-how-to-fix-it Sat, 02 May 2020 05:58:55 -0500 https://bioinformaticsonline.com/answers/view/41594/error-mate-does-not-occur-next-to-it-in-your-bam-file-how-to-fix-it *****WARNING: Query v300043428L4C001R0481272249 is marked as paired, but its mate does not occur next to it in your BAM file.  Skipping.

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