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	<title><![CDATA[BOL: All site blogs]]></title>
	<link>https://bioinformaticsonline.com/blog/all?offset=150</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/28940/webinar-on-implications-of-next-generation-sequencing-in-molecular-diagnosis-of-cancer-on-28-sep-2016</guid>
	<pubDate>Thu, 01 Sep 2016 01:52:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/28940/webinar-on-implications-of-next-generation-sequencing-in-molecular-diagnosis-of-cancer-on-28-sep-2016</link>
	<title><![CDATA[Webinar on Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep 2016]]></title>
	<description><![CDATA[<h3>Abstract:</h3><p>Genetic testing requires screening of the entire gene, which by conventional sequencing is time consuming and expensive. Next Generation Sequencing (NGS) based approaches increase the sensitivity of mutation detection, making it fast and cost-effective compared to the conventional tests performed in a reflex-testing mode. Strand NGS includes workflows with quality assessment and filter sections that do not require any manual intervention. Post-analytical workflows in Strand NGS allow users to execute sequence analysis with stringent filtering to eliminate false positive and low quality reads. This simplifies the analysis in large scale cohort settings, where every sample needs to be processed identically.</p><p>In this webinar we will discuss the implications of next generation sequencing based tests in multi-gene testing. We will also show how NGS based tests help to identify copy number variations, split read analysis and breakpoint identification. Finally, we will show a brief glimpse of Indian cohort data, where NGS based tests have shown improved mutation detection. In this webinar, we will present clinical case studies in on Hereditary Breast and Ovarian Cancer (HBOC) and Retinoblastoma patients to demonstrate how CNV analysis in Strand NGS enables researchers to detect and visualize copy number changes ranging from single exon to full gene.</p><h3>Speaker:</h3><p>Dr. Jaya Singh, Senior Scientist, Strand Life Sciences</p><p><strong>Date:</strong> <a href="http://www.strand-ngs.com/webinar_registration">28 September 2016</a></p><p><strong>Session1:</strong> <a href="http://www.strand-ngs.com/webinar_registration">2:30 PM IST</a></p><p><strong>Session2:</strong> <a href="http://www.strand-ngs.com/webinar_registration">10 PM IST</a></p><p><a href="http://www.strand-ngs.com/webinar_registration"><strong>Register here:</strong></a>&nbsp;http://www.strand-ngs.com/webinar_registration</p>]]></description>
	<dc:creator>Strand</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/28787/various-scholarships-around-the-world</guid>
	<pubDate>Fri, 12 Aug 2016 04:47:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/28787/various-scholarships-around-the-world</link>
	<title><![CDATA[Various scholarships around the world !!]]></title>
	<description><![CDATA[<p>This page provides information on&nbsp;scholarships for&nbsp;developing countries&nbsp; students who are in need of scholarship to study at home and abroad. A scholarship programme is often created to reward students who have worked hard in their career path. Every year prominent Universities and organizations fund scholarships for the students of developing countries to fulfill their dreams of studying at home and overseas for shaping their career perfectly. These scholarships are both fully funded and partially funded. Below weaved list of scholarships for students of developing countries includes all&nbsp;academic&nbsp;levels as&nbsp;undergraduate, graduate, masters,&nbsp;doctoral and postdoctoral students.</p><p><strong><a href="https://www.nottingham.ac.uk/studywithus/international-applicants/scholarships-fees-and-finance/scholarships/masters-scholarships/dev-sol-masters.aspx" target="_blank">Developing Solutions Masters Scholarship at University of Nottingham, UK</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>University of Nottingham<strong><br />Eligible Students:&nbsp;</strong>Applicants are not currently studying at a University of Nottingham campus or are not a University of Nottingham graduate<strong>.</strong><br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing masters degree programme&nbsp;at University of Nottingham.<br /><strong>Award Details:&nbsp;</strong>105 scholarships are available as follows: 30 x 100% tuition fee and 75 x 50% of tuition fees.<br /><strong>Application Deadline:&nbsp;</strong>22 April 2016</p><p><strong><a href="http://www.ed.ac.uk/student-funding/postgraduate/international/region/africa/nyerere" target="_blank">Julius Nyerere Master&rsquo;s Scholarships for Tanzanian Students at University of Edinburgh, UK</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>University of Edinburgh, UK<strong><br />Eligible Students:&nbsp;</strong>Applicants should already have been offered a place at the University of Edinburgh and should have firmly accepted that offer or be intending to do so.<strong><br />Courses:&nbsp;</strong>Scholarship is available for pursuing master&rsquo;s degree at University of Edinburgh.<strong><br />Award Details:</strong>&nbsp;The Julius Nyerere Master&rsquo;s Scholarships will cover the full overseas tuition fee, living costs of &pound;10,000, and a return flight from Tanzania to the UK.<br /><strong>Application Deadline:</strong>&nbsp;1st April 2016</p><p><strong><a href="http://cscuk.dfid.gov.uk/apply/shared-scholarships/info-candidates/" target="_blank">Commonwealth Shared Scholarships in UK, 2016</a><br /></strong><strong>Scholarship Provider:&nbsp;</strong>Commonwealth Scholarship Commission in the United Kingdom (CSC) in partnership with UK universities.<br /><strong>Eligible Students:&nbsp;</strong>Applicant must be a Commonwealth citizen, refugee, or British protected person.<strong><br />Courses:&nbsp;</strong>Scholarships are available for pursuing masters degree program&nbsp;at UK Institutions.<br /><strong>Award Details:&nbsp;</strong>Each Scholarship provides study travel grant towards the costs of study-related travel within the UK or overseas<br /><strong>Application Deadline:&nbsp;</strong>April 1, 2016</p><p><strong><a href="http://www.thehagueuniversity.com/bachelor-studies/admissions-and-finances/financing-your-bachelor-study/talent-scholarship" target="_blank">World Citizen Talent Scholarships for Non-EEA Students</a><br /></strong><strong>Scholarship Provider:&nbsp;</strong>Hague University,&nbsp;Netherlands<strong><br />Eligible Students:&nbsp;</strong>Applicant must enrolling for the first time and have not studied at any programmes of The Hague University of Applied Sciences<br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing bachelor degree&nbsp;level at&nbsp;Hague University.<br /><strong>Award Details:&nbsp;</strong>Scholarships&nbsp;each worth&nbsp;EUR 5,000&nbsp;are available to prospective bachelor degree students for the 2016-2017 academic year.<br /><strong>Application Deadline:&nbsp;</strong>31 March 2016</p><p><strong><a href="http://www.ihrp.mahidol.ac.th/index.php/en/academic-admissions/scholarships/137-starting-in-2016-2017-academic-year-emerging-scholar-program-for-master-of-arts-in-human-rights-international-program" target="_blank">IHRP Emerging Scholar Program at Mahidol University</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The Institute of Human Rights and Peace Studies (IHRP),&nbsp;Mahidol University,&nbsp;Thailand<br /><strong>Eligible Students:&nbsp;</strong>Applicant should have very strong English skills.<strong><br />Courses:&nbsp;</strong>Scholarship is available for pursuing MA degree programme.<br /><strong>Award Details:&nbsp;</strong>The scholarship allows for reduced tuition and thesis fees (4,200 Baht per credit to 1,200 Baht per credit each term and a 50 % of the cost of the thesis fee).<br /><strong>Application Deadline:&nbsp;</strong>March 31, 2016</p><p><strong><a href="http://scholarship-positions.com/fig-foundation-phd-scholarships-surveyinggeomatics-academic-programme-denmark/2015/11/21/" target="_blank">2016 FIG Foundation PhD Scholarships for Developing Countries, Denmark</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>FIG Foundation<strong><br />Eligible Students:&nbsp;</strong>Applicants from low-income, lower-middle or upper-middle income economy<strong>&nbsp;</strong>are eligible.<strong><br />Courses:&nbsp;</strong>Scholarships are available for pursuing PhD programme<strong>.</strong><br /><strong>Award Details:&nbsp;</strong>Successful applicants will qualify for a further grant of up to 3,000 euros to attend and present a peer reviewed paper at a FIG conference.<strong>&nbsp;</strong><br /><strong>Application Deadline:&nbsp;</strong>The application deadline is 1 March 2016.</p><p><strong><a href="https://www.humboldt-foundation.de/web/icf.html" target="_blank">International Climate Protection Fellowships for Developing Countries</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>Federal Environment Ministry&rsquo;s (BMU) International Climate Initiative<strong><br />Eligible Students:&nbsp;</strong>Applicant should have very good knowledge of English or German<strong><br />Courses:&nbsp;</strong>Fellowships are available for undertaking research in Germany<br /><strong>Award Details:&nbsp;</strong>Fellowship amount according to qualifications between &euro;2,150 and &euro;2,650 per month<br /><strong>Application Deadline:&nbsp;</strong>1 March 2016</p><p><strong><a href="http://www.isunet.edu/admissions/funding-scholarships" target="_blank">International Space University Scholarship Program in France, 2016<br /></a></strong><strong>Scholarship Provider:&nbsp;</strong>The International Space University<strong><br />Eligible Students:&nbsp;</strong>This financial aid is available for applicants from Europe,&nbsp;the United States, Canada and Australia, developing countries and from other countries.<br /><strong>Courses:&nbsp;</strong>Scholarship is available for MSS, SSP and SH-SSP students.<br /><strong>Award Details:&nbsp;</strong>This aid is available to selected applicants, and covers a portion of their tuition fees.<br /><strong>Application Deadline:&nbsp;</strong>MSS&nbsp;applicants:&nbsp;15 March 2016,&nbsp;SSP16 applicants:&nbsp;30 April 2016 and SH-SSP16 applicants:&nbsp;30 November</p><p><a href="https://www.lshtm.ac.uk/study/funding/janssen_pharmaceutica_scholarships_for_msc_global_mental_health.html" target="_blank"><strong>Janssen Pharmaceutica Scholarships for MSc in UK, 2016-2017</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>London School of Hygiene and Tropical Medicine, UK<strong><br />Eligible Students:&nbsp;</strong>Applicants must hold an offer of admission to the MSc Global Mental Health commencing in 2016-17.<br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing masters degree&nbsp;at King&rsquo;s College London.<br /><strong>Award Details:&nbsp;</strong>Each scholarship will cover full tuition fees, a living expense stipend of GBP 15,298.00 and an allowance in the summer for project expenses.<br /><strong>Application Deadline:&nbsp;</strong>29 February 2016</p><p><strong><a href="http://www.ox.ac.uk/admissions/undergraduate/fees-and-funding/oxford-support/reach-oxford-scholarship" target="_blank">Reach Oxford Scholarship for Students from Developing Countries</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>Oxford University,&nbsp;UK<strong><br />Eligible Students:&nbsp;</strong>This scheme is only suitable for candidates of the highest academic ability who have outstanding examination results.<br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing undergraduate&nbsp;degree&nbsp;level at Oxford University.<br /><strong>Award Details:&nbsp;</strong>Scholarship covers University fees and college fees, a grant for living expenses and one return air fare per year.<br /><strong>Application Deadline:&nbsp;</strong>17 February 2016</p><p><a href="https://www.oclc.org/about/awards.en.html" target="_blank"><strong>Jay Jordan IFLA/OCLC Development Fellowship Program, 2017</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>International Federation of Library Associations and Institutions (IFLA) and OCLC<br /><strong>Eligible Students:&nbsp;</strong>Applicant must have a qualifying degree in library or information science.<br /><strong>Courses:&nbsp;</strong>This is a&nbsp;intensive four-week Fellowship program based at OCLC&rsquo;s headquarters in Dublin, Ohio, USA&nbsp;for&nbsp;library and information science professionals.<br /><strong>Award Details:&nbsp;</strong>The award provides each fellow Airfare, coach class, from the recipient&rsquo;s home country to the United States and return trip to the recipient&rsquo;s home country<br /><strong>Application Deadline:&nbsp;</strong>February 12, 2016</p><p><strong><a href="http://scholarship-positions.com/franklin-mosher-baldwin-memorial-fellowships-for-developing-countries/2015/11/29/" target="_blank">Franklin Mosher Baldwin Memorial Fellowships for Developing Countries, 2016<br /></a></strong><strong>Scholarship Provider:&nbsp;</strong>The Leakey Foundation<strong><br />Eligible Students:&nbsp;</strong>Citizens of a developing countries are eligible.<strong><br />Courses:&nbsp;</strong>Fellowships are available for advanced special training or studies leading towards an M.A or PhD.<br /><strong>Award Details:&nbsp;</strong>The maximum award is limited to $15,000 per year.<br /><strong>Application Deadline:&nbsp;</strong>The application deadline is February 15 2016.</p><p><a href="http://www.mids.ch/the-students/financial-aid-scholarships/mids-managed-scholarships.html" target="_blank"><strong>MIDS-Managed Scholarships for Developing Countries</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>Geneva Law School and&nbsp;Graduate Institute of International and Development Studies<br /><strong>Eligible Students:&nbsp;</strong>Demonstrated financial need on the part of candidates as well as their immediate and extended families, employers and any other persons who might otherwise have been able to contribute toward financing their MIDS studies.<br /><strong>Courses:&nbsp;</strong>This scholarship is available for pursuing Master&rsquo;s degree (LLM).<br /><strong>Award Details:&nbsp;</strong>These scholarships cover the total tuition fees as well as CHF 15,000 toward living expenses.<br /><strong>Application Deadline:&nbsp;</strong>1<strong>&nbsp;</strong>February 2016</p><p><a href="http://immana.lcirah.ac.uk/interviewbekelemegersa" target="_blank">IMMANA Postdoctoral Fellowships, 2016</a><br /><strong>Scholarship Provider:&nbsp;</strong>UK Department for International Development (DFID), UK government<br /><strong>Eligible Students:&nbsp;</strong>Eligible applicants will have completed a doctorate (PhD, DPhil, DPH, MD, DVM or similar terminal degree) in any field<br /><strong>Courses:&nbsp;</strong>Fellowships are available for undertaking postdoctoral research programme.<br /><strong>Award Details:&nbsp;</strong>A fixed stipend of &pound;34,000 (approximately $52,000) paid in quarterly installments against satisfactory completion of programme milestones.<br /><strong>Application Deadline:&nbsp;</strong>1&nbsp;February 2016</p><p><strong><a href="http://www.edctp.org/call/edctp-tdr-clinical-research-development-fellowships-2/" target="_blank">2016 EDCTP-TDR Clinical Research and Development Fellowships</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>European &amp; Developing Countries Clinical Trials Partnership (EDCTP) and WHO/TDR.<strong><br />Eligible Students:&nbsp;</strong>Applicant must be a post-graduate (MSc or PhD) or medical graduate with clinical and/or research experience in infectious diseases.<br /><strong>Courses:&nbsp;</strong>Fellowships are available&nbsp;to early to mid-career clinical researchers and&nbsp;key members of clinical trial research teams.<br /><strong>Award Details:&nbsp;</strong>The grant covers one economy class return ticket (home &ndash; host organisation &ndash; home); a monthly stipend; health insurance; an allowance to cover essential educational support materials.<br /><strong>Application Deadline:&nbsp;</strong>28 January 2016 (Stage 1) and&nbsp;21 July 2016 (Stage 2:&nbsp;Training plan &ndash;&nbsp;EDCTP only).</p><p><strong><a href="http://www.unoosa.org/oosa/en/ourwork/psa/bsti/fellowships.html" target="_blank">United Nations/Japan Long-term Fellowship Programme on Nano-Satellite Technologies</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The United Nations Office for Outer Space Affairs and the Government of Japan<br /><strong>Eligible Students:&nbsp;</strong>Be nationals of developing countries or countries with economy in transition; be duly nominated by their institutions.<br /><strong>Courses:&nbsp;</strong>Scholarship is available for pursing PhD students.<br /><strong>Award Details:&nbsp;</strong>The selected candidates will each receive a grant under Japanese government (Mobukagakusho: MEXT) scholarship (Research Students) of about 145,000 yen per month.<strong><br />Application Deadline:&nbsp;</strong>24 January 2016</p><p><strong><a href="http://www.acmedsci.ac.uk/careers/funding-schemes/daniel-turnberg-travel-fellowship/" target="_blank">The Daniel Turnberg UK/Middle East Travel Fellowship Scheme</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>Daniel Turnberg Memorial Fund with ongoing support from the Royal College of Physicians, London, the Wellcome Trust and the Wolfson Family Charitable Trust.<strong><br />Eligible Students:&nbsp;</strong>Fellowship is open for medical and non-medical graduates who can show a commitment to a career in research.<br /><strong>Courses:&nbsp;</strong>Travel Fellowship for Medical researchers and bio scientists in the field of biomedical.<strong><br />Award Details:&nbsp;</strong>The Fellowship will cover airfare and a subsistence allowance for a period of up to<strong>four weeks</strong>.<strong>&nbsp;</strong>Funding is provided to an upper limit of&nbsp;&pound;3,500<strong>&nbsp;</strong>per fellowship<strong><br />Application Deadline:&nbsp;</strong>18 January 2016</p><p><a href="http://www.mmmf-grants.org/home/uscanada-program" target="_blank"><strong>MMMF Grants for Women of Developing Countries, 2016</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>Margaret McNamara Memorial Fund<strong><br />Eligible Students:&nbsp;</strong>Demonstrate a commitment to working to empower women and children in developing countries.<br /><strong>Courses:&nbsp;</strong>Grant is available towards the completion of the degree program in Canada and USA.<br /><strong>Award Details:&nbsp;</strong>An MMMF grant covers only a portion of the total costs for an academic year.<br /><strong>Application Deadline:&nbsp;</strong>January 16, 2016</p><p><strong><a href="http://scholarship-positions.com/dorothy-marchus-senesh-fellowship-women-developing-countries-usa/2015/10/14/" target="_blank">Dorothy Marchus Senesh Fellowship for Women from Developing Countries in USA, 2016-2017</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>International Peace Research Association Foundation<strong><br />Eligible Students:&nbsp;</strong>The Dorothy Senesh Fellowships are available to women from developing countries<strong>.</strong><strong><br />Courses:&nbsp;</strong>Fellowships are available for pursuing graduate programme.<br /><strong>Award Details:&nbsp;</strong>The Fellowships provide $5,000 per year for two years for both women, for a total of $10,000 each.<br /><strong>Application Deadline:&nbsp;</strong>Applications are due by January 15, 2016.</p><p><strong><a href="http://iprafoundation.org/senesh-fellowship/" target="_blank">Dorothy Marchus Senesh Fellowship for Women, 2016-2017</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>International Peace Research Association Foundation<strong><br />Eligible Students:&nbsp;</strong>The Dorothy Senesh Fellowships are available to women from developing countries who have completed a Bachelor&rsquo;s degree<br /><strong>Courses:&nbsp;</strong>Fellowships are available for pursuing graduate programme.<strong><br />Award Details:&nbsp;</strong>The Fellowships provide $5,000 per year for two years for both women, for a total of $10,000 each.<br /><strong>Application Deadline:&nbsp;</strong>January 15, 2016</p><p><a href="http://www.ox.ac.uk/admissions/graduate/fees-and-funding/fees-funding-and-scholarship-search/weidenfeld-hoffmann-scholarships-and-leadership-programme/louis-dreyfus-weidenfeld-scholarship-and-leadership-programme" target="_blank"><strong>Louis Dreyfus-Weidenfeld Scholarship in UK, 2016</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>Louis Dreyfus Foundation&nbsp;and University of Oxford, UK<br /><strong>Eligible Students:&nbsp;</strong>This scholarship seeks to support individuals who, following completion of their supported studies, will go on to actively engage in the chosen fields.<br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing full time graduate degree at University of Oxford.<br /><strong>Award Details:&nbsp;</strong>The scholarship will cover 100% of University and college fees and a grant for living costs (of at least &pound;14,057).<br /><strong>Application Deadline:&nbsp;</strong>8 or 22 January 2016, depending on your course.</p><p><strong><a href="http://wwf.panda.org/how_you_can_help/volunteer/prince_bernhard_scholarships/" target="_blank">WWF Prince Bernhard Scholarships for Developing Countries</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>WWF,&nbsp;Switzerland<strong><br />Eligible Students:&nbsp;</strong>Applications are encouraged from people seeking to build skills in specific subjects that will enhance their contribution to nature conservation.<strong><br />Courses:&nbsp;</strong>Scholarships are available for pursuing formal studies or professional training.<br /><strong>Award Details:&nbsp;</strong>The maximum amount for any one scholarship under this scheme is CHF 10,000 and preferential consideration is given to requests for less than CHF 10,000.<br /><strong>Application Deadline:&nbsp;</strong>5 January 2016</p><p><strong><a href="http://scholarship-positions.com/jncasr-cics-fellowship-programme-developing-countries-india/2015/10/03/" target="_blank">JNCASR-CICS Fellowship Programme for Developing Countries in India, 2016</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR ) Bangalore and the Centre for International Co-operation in Science(CICS)&nbsp;Chennai,&nbsp;India<strong><br /></strong><strong>Eligible Students:&nbsp;</strong>Citizens of developing countries<strong><br />Courses:&nbsp;</strong>Fellowships are available to undertake research studies (short-term, participatory research) in India.<br /><strong>Award Details:&nbsp;</strong>The Fellowship covers return airfare from place of work in their home country to place of work in India, boarding and lodging at the affiliated institution/s, and an adequate allowance in Indian currency to cover incidental expenses<strong>.</strong><br /><strong>Application Deadline:&nbsp;</strong>The last date for receipt of the applications is 31st October every year.</p><p><strong><a href="http://scholarship-positions.com/ifs-individual-research-grants-citizens-developing-countries/2015/11/26/" target="_blank">IFS Individual Research Grants for Citizens of Developing Countries, 2016</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>International Foundation for Science (IFS)<strong><br />Eligible Students:&nbsp;</strong>Citizens of following developing countries.<strong><br />Courses:</strong>&nbsp;Grants are available for pursuing research programme.<br /><strong>Award Details:&nbsp;</strong>Individual Research grants are awarded on merit in amounts up to USD 12,000 for one to three years.<br /><strong>Application Deadline:&nbsp;</strong>The deadline for submission of research grant applications is 31st December 2015.</p><p><strong><a href="http://www.kuleuven.be/iro/index.html" target="_blank">IRO Doctoral Scholarship for Developing Countries Students in Belgium</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>Catholic University of Leuven&rsquo;s&nbsp;Interfaculty Council for Development Cooperation,&nbsp;Belgium<strong><br />Eligible Students:&nbsp;</strong>The candidate must hold an academic qualification at least equivalent to a high distinction.<br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing&nbsp;PhD&nbsp;program&nbsp;at KU Leuven<br /><strong>Award Details:&nbsp;</strong>The scholarship includes monthly basic amount&nbsp;&euro; 1,415 (75% of the net salary of an assistant) paid at the end of each month&nbsp;for doctoral students&nbsp;and&nbsp;&euro;1000 paid at the beginning of each month<br /><strong>Application Deadline:&nbsp;</strong>November 9th</p><p><a href="http://cscuk.dfid.gov.uk/apply/split-site-scholarships/" target="_blank"><strong>Commonwealth Split-site (PhD) Scholarships for Developing Countries, 2016</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>UK Department for International Development (DFID)<strong><br />Eligible Students:&nbsp;</strong>Be registered for a PhD at a university in your home country<br /><strong>Courses:&nbsp;</strong>Scholarships are available for pursuing Split-site (PhD)<strong><br />Award Details:&nbsp;</strong>Each scholarship provides study travel grant towards the costs of study-related travel within the UK or overseas<br /><strong>Application Deadline:&nbsp;</strong>19 November</p><p><a href="http://cscuk.dfid.gov.uk/apply/medical-fellowships/" target="_blank"><strong>2016 Commonwealth Medical Fellowships in UK</strong><strong><br /></strong></a><strong>Scholarship Provider:&nbsp;</strong>UK Department for International Development (DFID)<strong><br />Eligible Students:&nbsp;</strong>Applicant must have qualified as a doctor or dentist between 1 October 2006 and 30 September 2009, or before 1 October 2001<br /><strong>Courses:&nbsp;</strong>Fellowships are available&nbsp;to doctors and dentists to enable them to spend between three and six months at a UK hospital.<br /><strong>Award Details:&nbsp;</strong>Each fellowship provides research support grant, payable to your host university hospital<br /><strong>Application Deadline:&nbsp;</strong>19 November</p><p><strong><a href="http://cscuk.dfid.gov.uk/apply/academic-fellowships/" target="_blank">Commonwealth Academic Fellowships for Mid-Career Academics in UK, 2016</a><br />Scholarship Provider:&nbsp;</strong>UK Department for International Development (DFID)<strong><br />Eligible Students:&nbsp;</strong>Applicant must be permanently resident in a developing Commonwealth country<br /><strong>Courses:&nbsp;</strong>Fellowships are awarded for&nbsp;early career&nbsp;academics to spend three months&nbsp;undertaking research and updating their skills&nbsp;at any approved UK university or higher education institution.<br /><strong>Award Details:&nbsp;</strong>Each fellowship provides grant towards the cost of preparing reports and other written work<br /><strong>Application Deadline:&nbsp;</strong>19 November</p><p><strong><a href="http://www.unep.org/provia/ACTIVITIES/FellowshipProgramme/tabid/794421/Default.aspx" target="_blank">PROVIA Visiting Fellowship Programme</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The Global Programme of Research on Climate Change Vulnerability, Impacts and Adaptation (PROVIA) and START<br /><strong>Eligible Students:&nbsp;</strong>The fellowship is open to professionals and researchers whose work involves designing, implementing, or promoting adaptation solutions.<br /><strong>Courses:</strong>&nbsp;Fellowship is available for<strong>&nbsp;</strong>four weeks residential&nbsp;programme at the host institution.<br /><strong>Award Details:</strong>&nbsp;It provides travel (airfare, visa application fee, and airport transfer) and accommodation (housing, daily subsistence allowance) expenses for this fellowship will be covered.<br /><strong>Application Deadline:</strong>&nbsp;20 November</p><p><strong><a href="http://coady.stfx.ca/themes/women/gcl/" target="_blank">Global Change Leaders Scholarship Program for Developing Countries</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The Coady International Institute, St. Francis Xavier University<br /><strong>Eligible Students:&nbsp;</strong>This program is targeted to emerging women leaders from developing countries who are working on development issues<br /><strong>Courses:&nbsp;</strong>It&nbsp;is a seven-week education program at Coady Institute&rsquo;s International Centre for Women&rsquo;s Leadership.<br /><strong>Award Details:&nbsp;</strong>The Global Change Leaders program provides successful candidates with a full scholarship that includes tuition, travel, accommodations, and meals.<br /><strong>Application Deadline:&nbsp;</strong>December 4</p><p><strong><a href="http://www.brookings.edu/about/employment/fellowship/2015/gbl15169" target="_blank">Center for Universal Education Echidna Global Program, 2016</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The Center for Universal Education, Brookings Institution, USA<br /><strong>Eligible Students:&nbsp;</strong>Applicants should have a background in education, development, economics, or a related area, with at least 15 years of professional experience<br /><strong>Courses:&nbsp;</strong>Scholarship is available for undertaking research at the Brookings Institution.<br /><strong>Award Details:&nbsp;</strong>Applicants selected for the fellowship will receive a living stipend of USD $5,000 a month (subject to U.S. tax withholding), paid housing for the four-and-a-half month term, and round-trip travel expenses.<br /><strong>Application Deadline:&nbsp;</strong>November 30</p><p><a href="http://training.iarc.fr/en/fellowships/postdoc.php" target="_blank"><strong>2016 IARC Postdoctoral Fellowships in Cancer Research, France</strong><br /></a><strong>Scholarship Provider:&nbsp;</strong>The International Agency for Research on Cancer (IARC)<br /><strong>Eligible Students:&nbsp;</strong>Candidates are required to have finished their doctoral degree (Ph.D.) within five years of the closing date.<br /><strong>Courses:&nbsp;</strong>Fellowships are available&nbsp;for postdoctoral researchers to complete their training at the IARC in France.<br /><strong>Award Details:&nbsp;</strong>The annual stipend is currently 33 000 Euros and will be paid monthly in advance.<br /><strong>Application Deadline:</strong>&nbsp;30 November</p><p><a href="http://www.isdb.org/irj/portal/anonymous?NavigationTarget=navurl://744f417a19ed335f9f3f27decc21e0c4" target="_blank"><strong>Islamic Development Bank Prize</strong><strong><br /></strong></a><strong>Scholarship Provider:&nbsp;</strong>Islamic Development Bank<strong><br />Eligible Students:&nbsp;</strong>Applicant must have engage in activities and /or reside in one of the IDB member countries or in a Muslim community in non-member countries.<br /><strong>Courses:&nbsp;</strong>Prize is available for women who have&nbsp;developed or be actively involved in projects/activities that are innovative and helped to improve&nbsp;access to safe and affordable water<br /><strong>Award Details:&nbsp;</strong>The Prize consists of two cash awards-U.S. $ 50,000 for a woman or a group of women and U.S. $ 100,000 for an organization.<strong><br />Application Deadline:&nbsp;</strong>30th November</p><p><strong><a href="http://www.facultyforthefuture.net/" target="_blank">Schlumberger Foundation Faculty for the Future Fellowships, 2016</a><br />Scholarship Provider:&nbsp;</strong>The Schlumberger Foundation<strong><br />Eligible Students:&nbsp;</strong>Fellowship applicants should have a proven track record of teaching experience or can demonstrate commitment to teaching.<br /><strong>Courses:&nbsp;</strong>Fellowships are available to pursue PhD or postdoctoral studies at leading universities abroad.<br /><strong>Award Details:&nbsp;</strong>Faculty for the Future grants are based on actual costs for eligible expenses up to a maximum of USD 50,000 per year and may be renewed through to completion of studies<br /><strong>Application Deadline:&nbsp;</strong>November 13th</p><p><strong><a href="https://www.ictp.it/research/math/fellowships.aspx" target="_blank">Mathematics Research Fellowships for Developing Countries</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The Abdus Salam International Centre for Theoretical Physics (ICTP)<br /><strong>Eligible Students:&nbsp;</strong>Visiting Fellows must have a PhD in mathematics prior to the start of their Fellowship.<strong><br />Courses:&nbsp;</strong>These visiting Fellowships are open to mathematicians&nbsp;for pursuing research programme at ICTP.<br /><strong>Award Details:&nbsp;</strong>A&nbsp;small number of visiting fellowships will be awarded.<br /><strong>Application Deadline:&nbsp;</strong>15 December</p><p><strong><a href="http://twas.org/opportunities/fellowships" target="_blank">TWAS-icipe Fellowship Program</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>The International Centre of Insect Physiology and Ecology (icipe)<br /><strong>Eligible Students:&nbsp;</strong>Applicant must be permanent residents in a developing country (other than Kenya)<br /><strong>Courses:&nbsp;</strong>Fellowships are available for undertaking&nbsp;PhD or postdoctoral&nbsp;studies.<strong><br />Award Details:&nbsp;</strong>Icipe will provide a standard monthly allowance which should be used to cover living costs, such as accommodation, food and health insurance.<br /><strong>Application Deadline:&nbsp;</strong>15th September</p><p><strong><a href="http://www.theisn.org/programs/fellowship-program?showall=&amp;limitstart=" target="_blank">ISN Fellowship Program for Developing Countries&rsquo; Students</a><br />Scholarship Provider:&nbsp;</strong>International Society of Nephrology<strong><br />Eligible Students:&nbsp;</strong>The candidates with the highest scores will be granted a fellowship.<br /><strong>Courses:&nbsp;</strong>Fellowship program provides relevant and contemporary nephrology training to physicians.<br /><strong>Award Details:&nbsp;</strong>The total sum of the grant is in alignment with the length of the training and varies according to the anticipated expenses in the host country, as per World Bank data.<br /><strong>Application Deadline:&nbsp;</strong>May 1st or October 1st</p><p><strong><a href="http://twas.org/opportunities/fellowships" target="_blank">TWAS-CSIR Fellowship Programme</a></strong><br /><strong>Scholarship Provider:&nbsp;</strong>Council of Scientific and Industrial Research, India<strong><br />Eligible Students:&nbsp;</strong>Hold a PhD degree in a field of science or technology.<br /><strong>Courses:&nbsp;</strong>Fellowships are available for pursuing research at postgraduate and postdoctoral level at&nbsp;laboratories and institutes<br /><strong>Award Details:&nbsp;</strong>CSIR will provide a monthly stipend to cover for living costs, food and health insurance<br /><strong>Application Deadline:&nbsp;</strong>31st August of each year</p><p><strong><a href="http://www.sfiar.ch/award.htm" target="_blank">SFIAR Awards for Developing Countries Students in Switzerland<br /></a></strong><strong>Scholarship Provider:&nbsp;</strong>The Swiss Forum for International Agricultural Research (SFIAR)<br /><strong>Eligible Students:&nbsp;</strong>Applicant has appropriate linkages in developing countries<strong>.<br />Courses:&nbsp;</strong>This award is available for pursuing&nbsp;PhD or postdoctoral level.<br /><strong>Award Details:&nbsp;</strong>The prize sum of the SFIAR Award is CHF 5&rsquo;000 for a PhD or Post Doc project and CHF 10&rsquo;000 for a team project.&nbsp;<strong><br />Application Deadline:&nbsp;</strong>20 November</p><p><strong><a href="https://ish.org.uk/student-zone/scholarship/" target="_blank">International Students House Residential Scholarships<br /></a></strong><strong>Scholarship Provider:&nbsp;</strong>(ISH)&nbsp;International&nbsp;Students House<strong><br />Eligible Students:&nbsp;</strong>Students should be from a developing or emerging country and intending to return on completion of their studies.<br /><strong>Courses:&nbsp;</strong>This is a two year residential scholarship program for postgraduate students.<br /><strong>Award Details:&nbsp;</strong>ISH&nbsp;provides a range of residential scholarships which provide free accommodation at ISH for up to a year and in exceptional circumstances up to three years.<strong>&nbsp;</strong><br /><strong>Application Deadline:&nbsp;</strong>30 June</p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/28439/binc-exam-preparation-tips</guid>
	<pubDate>Fri, 15 Jul 2016 20:53:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/28439/binc-exam-preparation-tips</link>
	<title><![CDATA[BINC exam preparation tips !!]]></title>
	<description><![CDATA[<p>How to prepare for <span>BINC (BioInformatics National Certification)</span>&nbsp;exam? What are the expected questions?</p><p>These are just a scant few of the common questions asked by bioinformatics students as they ready themselves for the next exam sitting. If you read the entire <a href="http://bioinformaticsonline.com/bookmarks/view/2334/binc-bioinformatics-national-certification-website-address">Syllabus</a> (and I know that everyone does), you will see a section devoted to study and exam techniques. The section discusses such broad concepts as motivation, scheduling, and retention. Upon reading this section, however, I find the "hints" to be too general. Much of the advice boils down to read, study, understand, and memorize the material. The techniques mentioned apply to everyone and thus the overall advice ends up as a broad overview of the learning process.</p><p>The idea behind this article is to give students ideas on different approaches and techniques in the preparation for exams. By providing various ways to prepare for the exam process, fascinated readers may gain some additional insight to help complement their studying methodology. There are, of course, many common themes expressed in this small empirical sample of students' study habits. The idea of note cards, memorization, and problem solving are frequently mentioned by all students. No matter what technique a candidate uses, it always takes a significant amount of time and personal resources to successfully complete the examination process.</p><p>1 Explain it in your own word</p><p>Your teacher or lecturer can explain something to you, you can learn it from a text book, your friends can study with you, even your own notes can explain it to you but all these explanations are of little use if, by the end, you can&rsquo;t explain what you have learned to yourself. The BINC exam looking for ability to write and explain the concept in your own word. You, therefore, need to illustrate in an exam to get top exam results, then you won&rsquo;t be happy with your end exam result. So don&rsquo;t just memorise and tick off the list &ndash; make sure you understand your theory.</p><p>2 Be an examiner yourself</p><p>Of course, depending on what you&rsquo;re studying, it may be quite difficult to get into a position to understand a concept, theory or other information you need to learn. Ask &lsquo;stupid&rsquo; question to yourself and train yourself for the worst! Embrace your curiosity, for as William Arthur Ward said: &ldquo;Curiosity is the wick in the candle of learning.&rdquo; Doing so will allow you to fill in the blanks and better prepare you for exams.</p><p>3 Quiz yourself</p><p>Once you feel you understand topic, it is important to test yourself regularly. Try yourself to replicate exam conditions as much as possible: turn your phone off, don&rsquo;t talk, time yourself etc. You can set yourself a study quiz or practice exam questions and, so long as you approach it with the right mindset, you can get a very good idea of how much you know. You gain a greater insight into where you stand in relation to what you&rsquo;ve studied so far.</p><p>4 Online study</p><p>Keeping the fact that, bioinformatics is ever changing subject, you might need to update yourself on timely basis. Don&rsquo;t feel obliged to just sit in front of a book with a highlighter; there are many different ways to improve your bioinformatics knowledge. Login and check almost all web servers and keep yourself updated, like how many genomes sequenced, sizes, techniques used, software names etc.</p><p>5 Study plan</p><p>In order to achieve exam success, you need to know what you want to achieve and focus on. That&rsquo;s why it is extremely important to set your Study Goals now and outline to yourself what you need to do. With your study goals in mind, you properly need to attention all subjects. It should be broad enough to allow you to add and change aspects but concise enough so you know you&rsquo;re covering each subject/topic as best you can at this point.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/26629/computer-simulation-of-genetic-mechanism</guid>
	<pubDate>Sun, 13 Mar 2016 09:29:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/26629/computer-simulation-of-genetic-mechanism</link>
	<title><![CDATA[Computer simulation of genetic mechanism !!]]></title>
	<description><![CDATA[<p>Computer simulation is the discipline of designing a model of an actual or theoretical physical/biological system, executing the model on a digital computer, and analyzing the execution output. Simulation embodies the principle of ``learning by doing'' --- to learn about the system we must first build a model of some sort and then operate the model. The use of simulation is an activity that is as natural as a child who role plays. Children understand the world around them by simulating (with toys and figurines) most of their interactions with other people, animals and objects. As adults, we lose some of this childlike behavior but recapture it later on through computer simulation. To understand reality and all of its complexity, we must build artificial objects and dynamically act out roles with them. Computer simulation is the electronic equivalent of this type of role playing and it serves to drive synthetic environments and virtual worlds. Within the overall task of simulation, there are three primary sub-fields: model design, model execution and model analysis<br /><br />Simulation models have become important tools in Bioinformatics studies. There are many reasons for this, but we emphasize three of the more important:</p><p>(1) they enable exploration of hypotheses, and as such, have become invaluable means to guide research;</p><p>(2) they are unique approaches to integrate (in the literal term of the word) biological knowledge, in the form of experimental results; and</p><p>(3) they enable connecting biology with other fields of study ranging from physiology to genomics;</p><p>This blog, and this software list, is intended to guide the potential user of simulation models.<br />It is not, in any way, meant to be comprehensive on the very diverse simulation tools that already exist, but focuses on mechanistic, dynamic models. Similarly, it is not meant to provide any coverage of the breadth of applications; however, for interested readers, we provide references to use as a possible starting point.<br /><br />Simulation models are meant to answer questions which scientists have in a dynamic, quantitative, and often, a pictorial way. Much of the bioinformatics research and its applications, in particular, involve a large number of components, actors, and factors. Assembling these in a coherent framework may seem a daunting task, especially for beginners, and can lead to confusion, even for experienced scientists, especially if the objectives of such an exercise are not well defined. Followings are the list of tools bioinformatician may use to analyze and provide answers to complex biological mechanisms and related problems.</p><p style="margin-bottom: 0in;">&nbsp;</p><table width="718" cellspacing="0" cellpadding="2"><colgroup><col width="134"> <col width="501"> </colgroup>
<tbody>
<tr><th style="border: none; padding: 0in;">
<p>Software Resource</p>
</th><th style="border: none; padding: 0in;">
<p>Brief Description and Homepage</p>
</th></tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/aladyn/">Aladyn </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Tools to investigate how demographic parameters, populations genetics and abiotic conditions affect the rate of adaptation <br /><a href="http://www.katja-schiffers.eu/research.html">http://www.katja-schiffers.eu/research.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/alf/">ALF </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A Simulation Framework for Genome Evolution <br /><a href="http://www.cbrg.ethz.ch/alf">http://www.cbrg.ethz.ch/alf</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/art/">ART </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>ART is a set of simulation tools to generate synthetic next-generation sequencing data by mimicking real sequencing process with empirical error models or quality profiles. <br /><a href="http://www.niehs.nih.gov/research/resources/software/biostatistics/art/">http://www.niehs.nih.gov/research/resources/software/biostatistics/art/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/bamsurgeon/">BAMSurgeon </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Methods for realistic simulation of mutations in real data. <br /><a href="https://github.com/adamewing/bamsurgeon">https://github.com/adamewing/bamsurgeon</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/bayesian-serial-simcoal/">Bayesian Serial SimCoal </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Bayesian Serial SimCoal, (BayeSSC) is a modification of SIMCOAL 1.0, a program written by Laurent Excoffier, John Novembre, and Stefan Schneider. <br /><a href="http://www.stanford.edu/group/hadlylab/ssc/index.html">http://www.stanford.edu/group/hadlylab/ssc/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/baysics/">BaySICS </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An integral platform with a graphical interface for statistical inference based on approximate Bayesian computation. <br /><a href="https://sites.google.com/site/baysicsabc/">https://sites.google.com/site/baysicsabc/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/beers/">BEERS </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct different isoforms and alternate splicing from RNA-Seq data <br /><a href="http://cbil.upenn.edu/BEERS/">http://cbil.upenn.edu/beers/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/bottleneck/">BOTTLENECK </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Bottleneck is a program for detecting recent effective population size reductions from allele data frequencies <br /><a href="http://www.ensam.inra.fr/URLB/bottleneck/bottleneck.html">http://www.ensam.inra.fr/urlb/bottleneck/bottleneck.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/bottlesim/">BottleSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>BottleSim is a computer simulation program for simulating the process of population bottlenecks <br /><a href="http://chkuo.name/software/BottleSim.html">http://chkuo.name/software/bottlesim.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/cass/">CASS </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Protein Sequence Simulation <br /><a href="https://liberles.cst.temple.edu/Software/CASS/index.html">https://liberles.cst.temple.edu/software/cass/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/cdpop/">CDPOP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations resulting from specified landscape processes governing organism movement behavior. <br /><a href="http://cel.dbs.umt.edu/CDPOP">http://cel.dbs.umt.edu/cdpop</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/classical-genetics-simulator/">Classical Genetics Simulator </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Web-based simulation software <br /><a href="http://www.cgslab.com/">http://www.cgslab.com/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/coasim/">CoaSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>CoaSim is a tool for simulating the coalescent process with recombination and geneconversion under various demographic models. <br /><a href="http://users-birc.au.dk/mailund/CoaSim/index.html">http://users-birc.au.dk/mailund/coasim/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/cosi/">cosi </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>The cosi package is written in C and is available as a tar file. <br /><a href="http://www.broadinstitute.org/%7Esfs/cosi/">http://www.broadinstitute.org/~sfs/cosi/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/cs-pseq-gen/">CS-PSeq-Gen </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A program to simulate the evolution of protein sequences under the constraints of the information of a particular reconstructed phylogeny <br /><a href="http://bioserv.rpbs.univ-paris-diderot.fr/software/CS-PSeq-Gen/">http://bioserv.rpbs.univ-paris-diderot.fr/software/cs-pseq-gen/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/dawg/">DAWG </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An application designed to simulate the evolution of recombinant DNA sequences in continuous time <br /><a href="http://scit.us/projects/dawg">http://scit.us/projects/dawg</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/easypop/">Easypop </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>EASYPOP is an individual based model intended to simulate datasets under a very broad range of conditions <br /><a href="http://www.unil.ch/dee/en/home/menuinst/softwares--dataset/softwares/easypop.html">http://www.unil.ch/dee/en/home/menuinst/softwares--dataset/softwares/easypop.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/egglib/">EggLib </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>EggLib is a C++/Python library and program package for evolutionary genetics and genomics. <br /><a href="http://egglib.sourceforge.net/">http://egglib.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/episim/">EpiSIM </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>EpiSIM: simulation of multiple epistasis, linkage disequilibrium patterns and haplotype blocks for genome-wide interaction analysis <br /><a href="https://sourceforge.net/projects/episimsimulator/files/">https://sourceforge.net/projects/episimsimulator/files/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/evolsimulator/">EvolSimulator </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A simulation test bed for hypotheses of genome evolution <br /><a href="http://acb.qfab.org/acb/evolsim/">http://acb.qfab.org/acb/evolsim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/evolveagene/">EvolveAGene </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A realistic coding sequence simulation program that separates mutation from selection and allows the user to set selection conditions <br /><a href="http://bellinghamresearchinstitute.com/software/index.html">http://bellinghamresearchinstitute.com/software/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/fastsimcoal/">fastsimcoal </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A continuous-&shy;‐time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios <br /><a href="http://cmpg.unibe.ch/software/fastsimcoal/">http://cmpg.unibe.ch/software/fastsimcoal/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/fastslink/">FastSLINK </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulation of Marker and Phenotype Data in Pedigrees <br /><a href="https://watson.hgen.pitt.edu/">https://watson.hgen.pitt.edu/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/ffpopsim/">FFPopSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>C++/Python library for population genetics. <br /><a href="http://webdav.tuebingen.mpg.de/ffpopsim/">http://webdav.tuebingen.mpg.de/ffpopsim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/flux-simulator/">FLUX SIMULATOR </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>The Flux Simulator aims at providing a deterministic in silico reproduction of the experimental pipelines for RNA-Seq, employing a minimal set of parameters. <br /><a href="http://sammeth.net/confluence/display/SIM/Home">http://sammeth.net/confluence/display/sim/home</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/forqs/">forqs </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Forward-in-time simulation of Recombination, Quantitative Traits, and Selection <br /><a href="https://bitbucket.org/dkessner/forqs">https://bitbucket.org/dkessner/forqs</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/forsim/">ForSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>ForSim: A Forward Evolutionary Computer Simulation <br /><a href="http://anth.la.psu.edu/research/weiss-lab/research/research">http://anth.la.psu.edu/research/weiss-lab/research/research</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/forwsim/">ForwSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>The program given below is based on the algorithm described in Padhukasahasram et al. 2008 to simulate genetic drift in a standard Wright-Fisher process. <br /><a href="http://badri-populationgeneticsimulators.blogspot.com/">http://badri-populationgeneticsimulators.blogspot.com/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/fpg/">FPG </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Forward Population Genetic simulation <br /><a href="https://bio.cst.temple.edu/%7Ehey/software/software.htm#FPG">https://bio.cst.temple.edu/~hey/software/software.htm#fpg</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/fregene/">FREGENE </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>FREGENE is a C++ program that simulates sequence-like data over large genomic regions in large diploid populations. <br /><a href="http://www.ebi.ac.uk/projects/BARGEN">http://www.ebi.ac.uk/projects/bargen</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/frequency-based-insilico-genome-generator-figg/">FIGG </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size and grouped by GC content across a genome to model new genomes in FASTA format while tracking applied mutations for use in analysis <br /><a href="http://insilicogenome.sourceforge.net/">http://insilicogenome.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/fwdpp/">fwdpp </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A C++ template library for implementing efficient forward simulations. <br /><a href="http://molpopgen.github.io/fwdpp/">http://molpopgen.github.io/fwdpp/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/gametes/">GAMETES </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Genetic Architecture Model Emulator for Testing and Evaluating Software: Simulates complex SNP models with pure, strict epistatic interactions with n-loci. <br /><a href="http://sourceforge.net/projects/gametes/?source=navbar">http://sourceforge.net/projects/gametes/?source=navbar</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/gasp/">GASP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Genometric Analysis Simulation Program. A software tool for testing and investigating methods in statistical genetics by generating samples of family data based on user specified models. <br /><a href="http://research.nhgri.nih.gov/gasp/">http://research.nhgri.nih.gov/gasp/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/gcta/">GCTA </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Genome-wide Complex Trait Analysis <br /><a href="http://www.complextraitgenomics.com/software/gcta/download.html">http://www.complextraitgenomics.com/software/gcta/download.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/gemsim/">GemSIM </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Next generation sequencing read simulator <br /><a href="http://sourceforge.net/projects/gemsim/">http://sourceforge.net/projects/gemsim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/geneartisan/">GeneArtisan </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulation of Markers in Case-Control Study Designs <br /><a href="http://www.rannala.org/?page_id=241">http://www.rannala.org/?page_id=241</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/genome/">GENOME </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A rapid coalescent-based whole genome simulator <br /><a href="http://www.sph.umich.edu/csg/liang/genome/">http://www.sph.umich.edu/csg/liang/genome/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/genomepop2/">GenomePop2 </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>GenomePop2 is a specialization of the program GenomePop just to manage SNPs under more flexible and useful settings. If you need models with more than 2 alleles please use the GenomePop program version. <br /><a href="https://ritchielab.psu.edu/research/research-areas/statistical-genetics-and-gen-epi/methods/genomesimla">https://ritchielab.psu.edu/research/research-areas/statistical-genetics-and-gen-epi/methods/genomesimla</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/genomesimla/">GenomeSimla </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>GenomeSIMLA is currently under development- however, we have a beta release that we are asking to be tested <br /><a href="http://chgr.mc.vanderbilt.edu/genomeSIMLA/">http://chgr.mc.vanderbilt.edu/genomesimla/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/gens2/">GENS2 </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. <br /><a href="https://sourceforge.net/projects/gensim/">https://sourceforge.net/projects/gensim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/gwasimulator/">GWAsimulator </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A rapid whole genome simulation program <br /><a href="http://biostat.mc.vanderbilt.edu/wiki/Main/GWAsimulator">http://biostat.mc.vanderbilt.edu/wiki/main/gwasimulator</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/hap-sample/">HAP-SAMPLE </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An association simulator for candidate regions or genome scans <br /><a href="http://www.hapsample.org/">http://www.hapsample.org/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/hapgen/">HAPGEN </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A simulator for the simulation of case control datasets at SNP markers <br /><a href="https://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html">https://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/hapsim/">HapSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients <br /><a href="http://cran.r-project.org/web/packages/hapsim/index.html">http://cran.r-project.org/web/packages/hapsim/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/hapsimu/">HAPSIMU </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A program that simulates heterogeneous populations with various known and controllable structures under the continuous migration model or the discrete model <br /><a href="http://l.web.umkc.edu/liujian/">http://l.web.umkc.edu/liujian/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/ibdsim/">IBDsim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>IBDSim is a computer package for the simulation of genotypic data under general isolation by distance models. <br /><a href="http://raphael.leblois.free.fr/">http://raphael.leblois.free.fr/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/indel-seq-gen/">indel-Seq-Gen </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A biological sequence simulation program that simulates highly divergent DNA sequences and protein superfamilies <br /><a href="http://bioinfolab.unl.edu/%7Ecstrope/iSG/">http://bioinfolab.unl.edu/~cstrope/isg/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/indelible/">Indelible </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A powerful and flexible simulator of biological evolution <br /><a href="http://abacus.gene.ucl.ac.uk/software/indelible/">http://abacus.gene.ucl.ac.uk/software/indelible/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/invertfregene/">invertFREGENE </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>InvertFREGENE is a forward-in-time simulator of inversions in population genetic data <br /><a href="http://www.ebi.ac.uk/projects/BARGEN/">http://www.ebi.ac.uk/projects/bargen/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/kernalpop/">kernalPop </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A spatially explicit population genetic simulation engine <br /><a href="http://cran.r-project.org/src/contrib/Archive/kernelPop/">http://cran.r-project.org/src/contrib/archive/kernelpop/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/macs/">MaCS </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Markovian Coalescent Simulator <br /><a href="http://www-hsc.usc.edu/%7Egarykche/">http://www-hsc.usc.edu/~garykche/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/marlin/">Marlin </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Marlin provides a user-friendly interface for performing forward-in-time population genetic simulations. <br /><a href="http://www.patrickmeirmans.com/software/Marlin.html">http://www.patrickmeirmans.com/software/marlin.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/mason/">Mason </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A package for the simulation of nucleotide data. <br /><a href="http://www.seqan.de/projects/mason/">http://www.seqan.de/projects/mason/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/mbs/">mbs </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection <br /><a href="http://www.sendou.soken.ac.jp/esb/innan/InnanLab/software.html">http://www.sendou.soken.ac.jp/esb/innan/innanlab/software.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/mendels-accountant/">Mendel's Accountant </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Mendel's Accountant (MENDEL) is an advanced numerical simulation program for modeling genetic change over time and was developed collaboratively by Sanford, Baumgardner, Brewer, Gibson and ReMine <br /><a href="http://mendelsaccount.sourceforge.net/">http://mendelsaccount.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/metapopgen/">MetaPopGen </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulates genetics in large size metapopulations <br /><a href="https://sites.google.com/site/marcoandrello/metapopgen">https://sites.google.com/site/marcoandrello/metapopgen</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/metasim/">MetaSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A tool to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets <br /><a href="http://ab.inf.uni-tuebingen.de/software/metasim/">http://ab.inf.uni-tuebingen.de/software/metasim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/mlcoalsim/">mlcoalsim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Multilocus Coalescent Simulations <br /><a href="http://code.google.com/p/mlcoalsim-v1/">http://code.google.com/p/mlcoalsim-v1/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/ms/">ms </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>The purpose of this program is to allow one to investigate the statistical properties of such samples, to evaluate estimators or statistical tests, and generally to aid in the interpretation of polymorphism data sets. <br /><a href="http://home.uchicago.edu/%7Erhudson1/source/mksamples.html">http://home.uchicago.edu/~rhudson1/source/mksamples.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/mshot/">msHOT </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>The purpose of this program is to allow one to investigate the statistical properties of such samples, to evaluate estimators or statistical tests, and generally to aid in the interpretation of polymorphism data sets. <br /><a href="http://home.uchicago.edu/%7Erhudson1/">http://home.uchicago.edu/~rhudson1/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/msms/">msms </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A coalescent Simlation tool with selection. <br /><a href="http://www.mabs.at/ewing/msms/index.shtml">http://www.mabs.at/ewing/msms/index.shtml</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/myssp/">MySSP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A program for the simulation of DNA sequence evolution across a phylogenetic tree <br /><a href="http://www.rosenberglab.net/software.html">http://www.rosenberglab.net/software.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/nemo/">Nemo </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A forward-time, individual-based, genetically explicit, and stochastic simulation program designed to study the evolution of genetic markers, life history traits, and phenotypic traits in a flexible (meta-)population framework. <br /><a href="http://nemo2.sourceforge.net/">http://nemo2.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/netrecodon/">NetRecodon </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Coalescent simulation of coding DNA sequences with recombination (inter and intracodon), migration and demography <br /><a href="http://code.google.com/p/netrecodon/">http://code.google.com/p/netrecodon/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/oncosimulr/">OncoSimulR </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>BioConductor package for Forward Genetic Simulation of Cancer Progresion with Epistasis <br /><a href="https://github.com/rdiaz02/OncoSimul">https://github.com/rdiaz02/oncosimul</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/pedagog/">PEDAGOG </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Software for simulating eco-evolutionary population dynamics <br /><a href="https://bcrc.bio.umass.edu/pedigreesoftware/node/5">https://bcrc.bio.umass.edu/pedigreesoftware/node/5</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/phenosim/">phenosim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A tool to add phenotypes to simulated genotypes <br /><a href="http://evoplant.uni-hohenheim.de/doku.php?id=software:software">http://evoplant.uni-hohenheim.de/doku.php?id=software:software</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/phylosim/">PhyloSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An R package for the Monte Carlo simulation of sequence evolution <br /><a href="http://www.ebi.ac.uk/goldman-srv/phylosim/">http://www.ebi.ac.uk/goldman-srv/phylosim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/pirs/">pIRS </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Profile-based Illumina pair-end reads simulator <br /><a href="https://code.google.com/p/pirs/">https://code.google.com/p/pirs/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/proteinevolver/">ProteinEvolver </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulation of protein evolution along phylogenies under structure-based substitution models <br /><a href="http://code.google.com/p/proteinevolver/">http://code.google.com/p/proteinevolver/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/qmsim/">QMSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>QTL and Marker Simulator <br /><a href="http://www.aps.uoguelph.ca/%7Emsargol/qmsim/">http://www.aps.uoguelph.ca/~msargol/qmsim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/quantinemo/">quantiNEMO </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An individual-based program for the analysis of quantitative traits with explicit genetic architecture potentially under selection in a structured population <br /><a href="http://www2.unil.ch/popgen/softwares/quantinemo/">http://www2.unil.ch/popgen/softwares/quantinemo/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/recoal/">RECOAL </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulates new haplotype data from a reference population of haplotypes. <br /><a href="ftp://popgen.usc.edu/">ftp://popgen.usc.edu/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/recodon/">Recodon </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Coalescent simulation of coding DNA sequences with recombination, migration and demography <br /><a href="http://code.google.com/p/recodon/">http://code.google.com/p/recodon/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/rlsim/">rlsim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A package for simulating RNA-seq library preparation with parameter estimation <br /><a href="http://bit.ly/rlsim-git">http://bit.ly/rlsim-git</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/rmetasim/">Rmetasim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Rmetasim is a front-end for the metasim engine that is implemented as a package that runs in the statistical computing environment R <br /><a href="http://cran.r-project.org/web/packages/rmetasim/index.html">http://cran.r-project.org/web/packages/rmetasim/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/rna-seq-simulator/">RNA Seq Simulator </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets. <br /><a href="http://useq.sourceforge.net/cmdLnMenus.html#RNASeqSimulator">http://useq.sourceforge.net/cmdlnmenus.html#rnaseqsimulator</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/rose/">Rose </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Random model of sequence evolution <br /><a href="http://bibiserv.techfak.uni-bielefeld.de/rose/">http://bibiserv.techfak.uni-bielefeld.de/rose/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/scrm/">scrm </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A coalescent simulator optimized for long sequences and large samples. <br /><a href="https://scrm.github.io/">https://scrm.github.io/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/selsim/">SelSim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>SelSim is a program for Monte Carlo simulation of DNA polymorphism data for a recom- bining region within which a single bi-allelic site has experienced natural selection <br /><a href="http://www.well.ox.ac.uk/%7Espencer/SelSim/">http://www.well.ox.ac.uk/~spencer/selsim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/seq-gen/">Seq-Gen </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An application for the Monte Carlo simulation of molecular sequence evolution along phylogenetic trees. <br /><a href="http://tree.bio.ed.ac.uk/software/seqgen/">http://tree.bio.ed.ac.uk/software/seqgen/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/seqpower/">SEQPower </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Statistical power analysis for sequence-based association studies <br /><a href="http://bioinformatics.org/spower/">http://bioinformatics.org/spower/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/seqsimla/">SeqSIMLA </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>SeqSIMLA can simulate sequence data with user-specified disease and quantitative trait models. Family or unrelated case-control data can be simulated. <br /><a href="http://seqsimla.sourceforge.net/">http://seqsimla.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/serial-netevolve/">Serial NetEvolve </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A flexible utility for generating serially-sampled sequences along a tree or recombinant network <br /><a href="http://biorg.cis.fiu.edu/SNE/">http://biorg.cis.fiu.edu/sne/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/sfs_code/">SFS_CODE </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>SFS_CODE can perform forward population genetic simulations under a general Wright-Fisher model with arbitrary migration, demographic, selective, and mutational effects. <br /><a href="http://sfscode.sourceforge.net/SFS_CODE/index/index.html">http://sfscode.sourceforge.net/sfs_code/index/index.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/sibsim/">SIBSIM </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Quantitative phenotype simulation in extended pedigrees <br /><a href="http://sourceforge.net/projects/sibsim/">http://sourceforge.net/projects/sibsim/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simadapt/">SimAdapt </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton. <br /><a href="https://www.openabm.org/model/3137">https://www.openabm.org/model/3137</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simcoal2/">SIMCOAL2 </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A coalescent program for the simulation of complex recombination patterns over large genomic regions under various demographic models <br /><a href="http://cmpg.unibe.ch/software/simcoal2/">http://cmpg.unibe.ch/software/simcoal2/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simcopy/">SimCopy </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>An R package simulating the evolution of copy number profiles along a tree. <br /><a href="http://bit.ly/simcopy">http://bit.ly/simcopy</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simla/">SIMLA </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>SIMLA is a SIMuLAtion program that generates data sets of families for use in Linkage and Association studies. <br /><a href="http://dmpi.duke.edu/simla-simulation-software-version-32">http://dmpi.duke.edu/simla-simulation-software-version-32</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simped/">SimPed </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A Simulation Program to Generate Haplotype and Genotype Data for Pedigree Structures <br /><a href="http://bioinformatics.org/simped/">http://bioinformatics.org/simped/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simprot/">Simprot </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A program to simulate protein evolution by substitution, insertion and deletion <br /><a href="http://www.uhnresearch.ca/labs/tillier/software.htm#3">http://www.uhnresearch.ca/labs/tillier/software.htm#3</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simrare/">SimRare </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Rare variant simulation and analysis tool <br /><a href="http://code.google.com/p/simrare/">http://code.google.com/p/simrare/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simugwas/">simuGWAS </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A forward-time simulator that simulates realistic samples for genome-wide association studies. <br /><a href="http://simupop.sourceforge.net/Cookbook/SimuGWAS">http://simupop.sourceforge.net/cookbook/simugwas</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/simupop/">simuPOP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>simuPOP is a general-purpose individual-based forward-time population genetics simulation environment. <br /><a href="http://simupop.sourceforge.net/">http://simupop.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/sissi/">SISSI </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A software tool to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. <br /><a href="http://www.cibiv.at/software/sissi/">http://www.cibiv.at/software/sissi/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/smartpop/">SMARTPOP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulating Mating Alliance as a Reproductive Tactic for Populations <br /><a href="http://smartpop.sourceforge.net/">http://smartpop.sourceforge.net/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/snpsim/">SNPsim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Coalescent simulation of hotspot recombination <br /><a href="http://code.google.com/p/phylosoftware/">http://code.google.com/p/phylosoftware/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/spip/">SPIP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>SPIP simulates the transmission of genes from parents to offspring in a population having demographic structure defined by the user <br /><a href="http://swfsc.noaa.gov/textblock.aspx?Division=FED&amp;id=3434">http://swfsc.noaa.gov/textblock.aspx?division=fed&amp;id=3434</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/splatche/">Splatche </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Spatial and Temporal Coalescences in Heterogeneous Environment <br /><a href="http://www.splatche.com/">http://www.splatche.com/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/srv/">srv </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Simulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. <br /><a href="http://simupop.sourceforge.net/Cookbook/SimuRareVariants">http://simupop.sourceforge.net/cookbook/simurarevariants</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/sup/">SUP </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>SLINK/FastSLINK utility program <br /><a href="http://mlemire.freeshell.org/software.html">http://mlemire.freeshell.org/software.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/treesimj/">TreesimJ </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A flexible, forward-time population genetic simulator <br /><a href="http://code.google.com/p/treesimj/">http://code.google.com/p/treesimj/</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/variant-simulation-tools/">Variant Simulation Tools </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>A simulation tool for post-GWAS genetic epidemiological studies using whole-genome or whole-exome next-gen sequencing data, with an emphasis on user-friendliness and reproducibility. <br /><a href="http://varianttools.sourceforge.net/Simulation/HomePage">http://varianttools.sourceforge.net/simulation/homepage</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/vortex/">Vortex </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>VORTEX is an individual-based simulation model for population viability analysis (PVA). <br /><a href="http://www.vortex9.org/vortex.html">http://www.vortex9.org/vortex.html</a></p>
</td>
</tr>
<tr><th style="border: none; padding: 0in;">
<p><a href="https://popmodels.cancercontrol.cancer.gov/gsr/packages/wessim/">Wessim </a></p>
</th>
<td style="border: none; padding: 0in;">
<p>Whole Exome Sequencing SIMulator <br /><a href="http://sak042.github.io/Wessim/">http://sak042.github.io/wessim/</a></p>
</td>
</tr>
</tbody>
</table><p style="margin-bottom: 0in;">&nbsp;</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/26395/biolinux-ubuntu-desktop-folder-and-files-disappeared</guid>
	<pubDate>Tue, 16 Feb 2016 08:40:41 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/26395/biolinux-ubuntu-desktop-folder-and-files-disappeared</link>
	<title><![CDATA[BioLinux Ubuntu Desktop folder and files disappeared !!]]></title>
	<description><![CDATA[<p>Restarted my BioLinux ubuntu computer after an update, and when I logged back in, I noticed that all of my files went missing. Instead of Desktop folder, icons of all of my home folder are showed on desktop.</p><p>Then I thaught it migh be a problem of graphical display and I opened the terminal out of curiosity, and I found out that there is no ~/Desktop folder at all. What happened? What do I need to do?</p><p>Then I google the problem and found this is a very common problem after updates. To fix this problem, follow these steps:</p><p>You need to edit the ~/.config/user-dirs.dirs file, and make sure the contents of the file are like the following:<br /><br />XDG_DESKTOP_DIR="$HOME/Desktop"<br />XDG_DOWNLOAD_DIR="$HOME/Downloads"<br />XDG_TEMPLATES_DIR="$HOME/"<br />XDG_PUBLICSHARE_DIR="$HOME/Share"<br />XDG_DOCUMENTS_DIR="$HOME/Documents"<br />XDG_MUSIC_DIR="$HOME/Music"<br />XDG_PICTURES_DIR="$HOME/Pictures"<br />XDG_VIDEOS_DIR="$HOME/Videos"<br /><br />Then restart nautilus:<br /><br />killall nautilus<br /><br />or<br /><br />nautilus -q<br /><br />Then, open nautilus via Unity menu (press the Super key) or using the run command (Alt+F2)</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/25396/bgagenomicsdb-acaryochloris-marina-mbic11017-a-cyanobacterial-organim</guid>
	<pubDate>Thu, 03 Dec 2015 01:38:52 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/25396/bgagenomicsdb-acaryochloris-marina-mbic11017-a-cyanobacterial-organim</link>
	<title><![CDATA[BGAgenomicsDB: Acaryochloris marina MBIC11017 - A cyanobacterial organim]]></title>
	<description><![CDATA[<p>We have developed a database system cyanobacterial organims called <a href="http://bioinformaticsonline.com/bgagenomics.iicb.res.in" title="BgaGenomicsDB | A Comparative Genomics Resource for Cyanobacteria">bgagenomicsDB</a>. Cyanobacteria or some time called blue gree algee(BGA) is found in almost every teristorial .They have application in industrial product, health application, food technology etc. &nbsp;</p><p>One of the cyanobacterial organism is&nbsp;<em><a href="http://bgagenomics.iicb.res.in/bga/browserUI.php?organism=329726&amp;action=refresh&amp;action_params=1" title="Acaryochloris marina MBIC11017">Acaryochloris marina MBIC11017</a>. This organism has one circular chromosome and 9 plasmids.&nbsp;</em></p><p><em>Chromosome's <a href="http://bgagenomics.iicb.res.in/bga/view_circos.php?data=329726_NC_009925.1" title="Bgagenomcis Circular view for Acaryochloris marina MBIC11017">circular view&nbsp;</a></em></p><p><img src="http://bgagenomics.iicb.res.in/bga/map_image/329726_NC_009925.1.png" alt="Acaryochloris marina MBIC11017: NC 009925.1  Circular View" width="600" height="600" style="border: 0px; border: 0px;"></p><p>&nbsp;</p><p>Want to know more about this organism visit : <a href="http://bioinformaticsonline.com/bgagenomics.iicb.res.in" title="BgaGenomicsDB | A Comparative Genomics Resource for Cyanobacteria">bgagenomics.iicb.res.in</a></p><p>&nbsp;</p><p>&nbsp;</p>]]></description>
	<dc:creator>Arijit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/23680/five-key-traits-to-seek-out-in-potential-bioinformatics-candidates</guid>
	<pubDate>Mon, 10 Aug 2015 12:53:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/23680/five-key-traits-to-seek-out-in-potential-bioinformatics-candidates</link>
	<title><![CDATA[Five key traits to seek out in potential bioinformatics candidates !!!]]></title>
	<description><![CDATA[<p>Genomics and proteomics data are being collected in bulk, but mostly, traditional biologist don&rsquo;t know what to do with it. Perhaps this is the reason why (not only this!!! ) computational biologist/bioinformatics scientists are hot commodities in the research world.</p><p>In fact, there are huge demands for expert biological data analyst. It&rsquo;s a fairly new &nbsp;(not exactly) hot area, these bioinformatician are invaluable because they know and understand the significance of biological data for your research and how you can use it for better understanding of biological problems.</p><p>The bioinformatics can discover biological patterns and stories in genomic and proteomics data. They can develop the pipeline needed to properly collect, store and analyse it.</p><p><img src="http://bioinformaticsonline.com/mod/photo/hire.gif" alt="image" style="border: 0px;"></p><p>Once your research group is ready to make a larger investment and hire a bioinformatician to gain a competitive edge, there are several key traits to seek out in potential candidates. The best bioinformatician are:</p><p>1. Highly Skilled - programming skills, experience with the biological software and tools.</p><p>The biological data won&rsquo;t illuminate much if the scientist analysing it doesn&rsquo;t possess practical programming skills, experience with the biological software and tools and a thorough understanding of basic biological stuff. A solid background in mathematics and statistics is also an indispensable trait.</p><p>2. Insight - Real vision, robust understanding and deep insight.</p><p>In order to hire the best bioinformatics and computational biologist scientist for your needs, it is always recommended and mostly practiced by the recruiters, to ask each contender to write and develop a sample script/presentation based on a specific set of data you provide. Then, explore the approaches used to deal with data provided and pick up those candidates who convey real vision, robust understanding and deep insight.</p><p>3. Energetic &ndash; Curiosity to explore</p><p>Mostly natural curiosity and enthusiasm for solving big biological problems coupled with an ability to transform data into a scientific stories may place one candidate above the rest. In addition to achieve that, the bioinformatician should be agile enough to quickly modify their methods to suit changes within a particular research.</p><p>4. Researcher &ndash; Publications</p><p>Look for someone who has a keen sense and understanding of concern biological problems. You can judge it by looking at previously published papers and data. It is always recommended to have a look at GitHub and other repository for codes written by her/him.</p><p>5. Impressive communicator - Insight that can&rsquo;t be expressed is worthless.</p><p>Good bioinformatics scientists are able to uncover biological patterns and are willing to explain those patterns in clear and helpful ways through thoughtful and open communication. In other words, they should must have good scientific writing skills. A computational biologis/bioinformatician&nbsp; should know how to present the data and tell a scientific story through numbers/images.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/23586/calling-narrow-and-broad-peaks-from-chip-seq-data</guid>
	<pubDate>Tue, 04 Aug 2015 05:06:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/23586/calling-narrow-and-broad-peaks-from-chip-seq-data</link>
	<title><![CDATA[Calling narrow and broad peaks from ChIP-Seq data]]></title>
	<description><![CDATA[<p><span>Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.</span><br /><a href="http://www.strand-ngs.com/learn/white-papers#broad-peaks" target="_blank" title="Calling narrow and broad peaks from ChIP-Seq data in Strand NGS">Read the benchmarking study</a><span>&nbsp;on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit Gupta and Anita Sathyanarayanan. For more information, please&nbsp;</span><a href="http://www.strand-ngs.com/contact/sales" target="_blank" title="strand ngs contact">contact us</a></p>]]></description>
	<dc:creator>Strand</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/23584/integrated-mrna-and-microrna-transcriptome-analysis-in-strand-ngs</guid>
	<pubDate>Tue, 04 Aug 2015 05:04:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/23584/integrated-mrna-and-microrna-transcriptome-analysis-in-strand-ngs</link>
	<title><![CDATA[Integrated mRNA and microRNA transcriptome analysis in Strand NGS]]></title>
	<description><![CDATA[<p><span>Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA &ndash; mRNA interactions in regulatory networks.</span><br /><a href="http://www.strand-ngs.com/learn/white-papers#rna-mirna" target="_blank" title="Integrated mRNA and microRNA transcriptome analysis">Read the application note</a><span>&nbsp;on Integrated mRNA and microRNA transcriptome analysis in Strand NGS by Veena Hedatale and Rohit Gupta. For more information, please&nbsp;</span><a href="http://www.strand-ngs.com/contact/sales" title="Strand NGS contact">contact us</a></p>]]></description>
	<dc:creator>Strand</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/23582/integrative-rna-and-chip-seq-analysis-of-regulatory-t-cells</guid>
	<pubDate>Tue, 04 Aug 2015 05:03:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/23582/integrative-rna-and-chip-seq-analysis-of-regulatory-t-cells</link>
	<title><![CDATA[Integrative RNA and ChIP-Seq analysis of regulatory T-cells]]></title>
	<description><![CDATA[<p><a href="http://www.strand-ngs.com/learn/white-papers#rna-chip" target="_blank" title="strand ngs white paper">Integrative RNA and ChIP-Seq analysis of regulatory T-cells&nbsp;</a><span>, a Strand NGS application note describes how integrated multi-omics functionality in Strand NGS was used to find the regulatory role of FoxP3 in T-regulatory and T-helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor information,&nbsp;</span><a href="http://www.strand-ngs.com/contact/sales" target="_blank" title="strand ngs contact">please write to us</a></p>]]></description>
	<dc:creator>Strand</dc:creator>
</item>

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