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	<title><![CDATA[BOL: All site blogs]]></title>
	<link>https://bioinformaticsonline.com/blog/all?offset=160</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34727/letter-of-motivation-for-bioinformatics-applicants</guid>
	<pubDate>Thu, 21 Dec 2017 03:43:04 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34727/letter-of-motivation-for-bioinformatics-applicants</link>
	<title><![CDATA[Letter of motivation for bioinformatics applicants !]]></title>
	<description><![CDATA[<p>A motivation letter, or sometimes called letter of motivation or motivational letter, is actually a letter being send together with your professional resume to support your application for job, University admission or internship. The motivational letter is actually a personal statement which should persuade selection panel, or human resource clerk that you are perfect candidate for a position. Writing a impressive &lsquo;Letter of Motivation&rsquo; might help you to get the post with an ease.&nbsp;</p><p>Usually when you apply anywhere you need to fulfill some specific kind of requirements which usually include writing a formal application, letter of motivation, research proposal etc. Usually it is hard for grad students to write a crisp, clean and clear letter of motivation. To be honest, you may find several posts on the internet which do tell you how to write professionally. They are good enough to clearly tell you what points should be included, what not and many other things to learn about professional writing. Still, when I look back at my graduation days, I know even after reading many instructions I was not able to write &lsquo;to-the-point&rsquo;. According to me , writing skill is not something that you can part in binary like- &lsquo;I write perfectly&rsquo; or &lsquo;I can not write even a word&rsquo;. It is something that you learn and get better with the the time. So, I am not going to pin-point the suggestions because you can get it many where but some &lsquo;to-the-point&rsquo; things which you may use directly in your letter.</p><h5>Ideas and main points</h5><p>Start with writing down some of the main ideas, important points you would like to approach in your letter and later build around them, enrich their content; an example would be :</p><ol>
<li>Make your goal clear; provide a short preview of the rest of the letter;</li>
<li>Why do you think that the university and the Master's program are interesting and suitable for you? ;</li>
<li>Focus on some of your strongest qualifications, past experiences (international experiences are always relevant) and qualities; organise the middle paragraphs in terms of the qualifications most relevant to the programme, you can also refer to your CV for more details;</li>
<li>Conclude by restating your interest and show appreciation for the chance to prove yourself in the letter (in some cases you can ask for a personal interview)</li>
</ol><p>How to start- <br />Your very first line should not be just a line but an impression and reference. None would want to read you unless he knows what it is about. Just like this post. If I would not have written that it is about writing a motivation-letter, you probably would not get annoyed. So start by writing what your letter is about. It could seem like this-</p><h5>Letter Of Application</h5><p>Your Address And Contact Details</p><p>Receiver&rsquo;s Address</p><p>Dear XYZ</p><p>I would like to apply for the&hellip;..</p><p>or</p><p>I am writing here to apply for the&hellip;</p><p>or</p><p>This is regarding your advert. published&hellip;.</p><p>Then Tell Background like-<br />As my resume reveals, I have Bachelor`s degree from XYZ University and currently, I am&hellip;..</p><p>Be sure to signify your institution/University like-<br />I am privileged to obtain my postgraduate education in Bioinformatics at XXX which is known for its enriching academic ambiance where learning and research complement each other.</p><p>Then tell about your professional experience like-<br />Being taught by eminent faculty, I have developed a big interest and passion towards Bioinformatics and managed to have a strong foundation in &hellip;&hellip;</p><p>After that tell how this position would help you, like-<br />The opportunity to participate in this study would foster&hellip;.</p><p>Assure them that you will make use of whatever you learn there, like-<br />I plan to ensure the further dissemination of the knowledge and experience gained by this opportunity in&hellip;</p><p>Close the letter with usual formality, like-<br />I, hereby enclose a copy of my CV/Resume (whatever it is, there is a difference we all know it) with the hope of consideration. Looking forward to hearing from you.</p><p><br />All the things written above is just my view. You still should see and learn which can be done by one thing and that is -reading about it. Then , please try to write yourself, do not copy /paste. Whatever is written in the post is just to have an idea about the things that should be included in the letter of motivation. You need to write accordingly with a wise choice of words.<br />Hope this was helpful. You may comment or ask anything if you want to.</p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34707/string-graph-based-genome-assembly-software-and-tools</guid>
	<pubDate>Tue, 19 Dec 2017 17:17:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34707/string-graph-based-genome-assembly-software-and-tools</link>
	<title><![CDATA[String graph based genome assembly software and tools !]]></title>
	<description><![CDATA[<p>In&nbsp;<a href="https://en.wikipedia.org/wiki/Graph_theory" title="Graph theory">graph theory</a>, a&nbsp;<strong>string graph</strong>&nbsp;is an&nbsp;<a href="https://en.wikipedia.org/wiki/Intersection_graph" title="Intersection graph">intersection graph</a>&nbsp;of&nbsp;<a href="https://en.wikipedia.org/wiki/Curve" title="Curve">curves</a>&nbsp;in the plane; each curve is called a "string".&nbsp; String graphs were first proposed by E. W. Myers in a&nbsp;<a href="http://bioinformatics.oxfordjournals.org/content/21/suppl_2/ii79.full.pdf+html">2005 publication</a>.&nbsp;In&nbsp;recent&nbsp;<a href="http://genome.cshlp.org/content/early/2012/01/22/gr.126953.111">Genome Research paper</a>&nbsp;describing an innovative approach for assembling large genomes from NGS data caught our attention for several reasons. i) it give different "string graph" prospective of long lasting genome assembly problem ii) the&nbsp;paper is coauthored by Jared Simpson, the developer of&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694472/">ABySS assembler</a>&nbsp;and Richard Durbin. iii)&nbsp;Simpson-Durbin algorithm is that it does not rely on de Bruijn graphs, and instead employs a different graph construction approach called &lsquo;string graph&rsquo;.</p><p>Following are the genome assembly tools based on string graph:</p><p>1.SGA (String Graph Assembler)&nbsp;https://github.com/jts/sga</p><p>Assembles large genomes from high coverage short read data. SGA is designed as a modular set of programs, which are used to form an assembly pipeline. SGA implements a set of assembly algorithms based on the FM-index. As the FM-index is a compressed data structure, the algorithms are very memory efficient. The SGA assembly has three distinct phases. The first phase corrects base calling errors in the reads. The second phase assembles contigs from the corrected reads. The third phase uses paired end and/or mate pair data to build scaffolds from the contigs. The output of this software is a PDF report that allows the properties of the genome and data quality to be visually explored. By providing more information to the user at the start of an assembly project, this software will help increase awareness of the factors that make a given assembly easy or difficult, assist in the selection of software and parameters and help to troubleshoot an assembly if it runs into problems.</p><p>2.&nbsp;SAGE: String-overlap Assembly of GEnomes&nbsp;https://github.com/lucian-ilie/SAGE2</p><p>SAGE, for de novo genome assembly. As opposed to most assemblers, which are de Bruijn graph based, SAGE uses the string-overlap graph. SAGE builds upon great existing work on string-overlap graph and maximum likelihood assembly, bringing an important number of new ideas, such as the efficient computation of the transitive reduction of the string overlap graph, the use of (generalized) edge multiplicity statistics for more accurate estimation of read copy counts, and the improved use of mate pairs and min-cost flow for supporting edge merging. The assemblies produced by SAGE for several short and medium-size genomes compared favourably with those of existing leading assemblers.</p><p>3. FSG: Fast String Graph</p><p>The new integrated assembler has been assessed on a standard benchmark, showing that fast string graph (FSG) is significantly faster than SGA while maintaining a moderate use of main memory, and showing practical advantages in running FSG on multiple threads. Moreover, we have studied the effect of coverage rates on the running times.</p><p>4.&nbsp;&nbsp;BASE&nbsp;https://github.com/dhlbh/BASE</p><p>It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE to build extension trees and then to use reverse validation to remove the branches based on read coverage and paired-end information, resulting in high-quality consensus sequences of reads sharing the seeds. Such consensus sequences are then extended to contigs.&nbsp;BASE is a practically efficient tool for constructing contig, with significant improvement in quality for long NGS reads. It is relatively easy to extend BASE to include scaffolding.</p><p>5.&nbsp;Fermi&nbsp;https://github.com/lh3/fermi/</p><p>Fermi is a de novo assembler with a particular focus on assembling Illumina&nbsp;short sequence reads from a mammal-sized genome. In addition to the role of a&nbsp;typical assembler, fermi also aims to preserve heterozygotes which are often&nbsp;collapsed by other assemblers. Its ultimate goal is to find a minimal set of&nbsp;unitigs to represent all the information in raw reads.</p><p>If you want to learn about String Graph assembler, please read the following papers -</p><p>i)&nbsp;<a href="http://bioinformatics.oxfordjournals.org/content/21/suppl_2/ii79.full.pdf+html">The Fragment Assembly String Graph - E. W. Myers</a></p><p>This paper describes the String Graph concept.</p><p>ii)&nbsp;<a href="http://bioinformatics.oxfordjournals.org/content/26/12/i367.full#ref-20">Efficient construction of an assembly string graph using the FM-index - Jared T. Simpson and Richard Durbin</a></p><p>This earlier paper from Simpson and Durbin</p><p>iii)&nbsp;<a href="http://genome.cshlp.org/content/early/2012/01/22/gr.126953.111">Efficient de novo assembly of large genomes using compressed data structures - Jared T. Simpson and Richard Durbin</a></p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/34326/list-of-research-institutes-in-india-biological-sciences-biotechnology</guid>
	<pubDate>Tue, 14 Nov 2017 09:46:16 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34326/list-of-research-institutes-in-india-biological-sciences-biotechnology</link>
	<title><![CDATA[List of Research Institutes in India (Biological Sciences/ Biotechnology)]]></title>
	<description><![CDATA[<p>A laboratory (normally lab) is a facility that provides controlled conditions in which scientific or technological research, experiments, and measurement may be performed.</p><p>The aims of bio/medical research are also broad, including:<br />&bull; Understanding mechanism of disease<br />&bull; Understanding the impact of genetic and external factors on human health<br />&bull; Designing and evaluating new therapeutic interventions<br />&bull; Health genomics</p><p>List of Research Institutes in India (Biological Sciences)</p><p>BANGALORE <br />Ashoka Trust for Ecology and the Environment<br />Royal Enclave, Srirampura, Jakkur Post, Bangalore-560064<br />Email: info@atree.org<br />Web: www.atree.org/<br />Research: ATREE deals with issues relating to the environmental, social and economic dimensions, and implications of, biological resources and natural ecosystems</p><p>Indian Institute of Science<br />Indian Institute of Science, Bangalore 560 012, Karnataka<br />Email:regr@admin.iisc.ernet.in<br />Web: www.iisc.ernet.in/<br />Research Areas: Biochemistry, ecological sciences, microbiology &amp; cell biology, molecular biophysics, molecular reproduction, development &amp; genetics.</p><p><br />Jawaharlal Nehru Centre for Advanced Scientific Research<br />Jakkur, Bangalore 560 064, Karnataka<br />Email: academic@jncasr.ac.in<br />Web: www.jncasr.ac.in/<br />Research Areas: Evolutionary and organismal biology, molecular biology and genetics.</p><p><br />National Centre for Biological Science<br />GKVK, Bellary Road,<br />Email: dean@ncbs.res.in<br />Web: www.ncbs.res.in<br />Research Areas: The research interests of the faculty range from single molecules to systems biology.</p><p><br />National Institute of Mental Health and Neurosciences<br />Bangalore 560029, Karnataka<br />Email: info@nimhans.kar.nic.in<br />Web: nimhans.kar.nic.in/<br />Research Areas: Biophysics, biostatistics, clinical psychology, epidemiology, human genetics, mental health education, neuroanaesthesia, neurochemistry, neuro imaging and interventional radiology, neurology, neuromicrobiology, neuropathology, neurophysiology, neurosurgery, neurovirology.</p><p><br />Stem Cell Institute<br />NCBS, GKVK, Bellary Road,<br />Email: ramas@ncbs.res.in<br />Web: underconstruction</p><p><br />University of Agricultural Sciences<br />GKVK, Bangalore 5600065, Karnataka<br />Email: root@uas.kar.nic.in<br />Web: uasbng.kar.nic.in/Default.htm<br />BARODA</p><p>Maharaja Sayajirao University of Baroda<br />Fatehgunj, Vadodara 390 002, Gujarat<br />Web: msubaroda.ac.in/</p><p>BHOPAL <br />Indian Institute of Science Education and Research&ndash;Bhopal<br />Govindpura, Bhopal - 23<br />E-mail: director@iiserbhopal.ac.in<br />Web: www.iiserbhopal.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br />BHUBANESHWAR <br />Institute of Life Sciences<br />Bhubaneswar 751 023, Orissa<br />Web: www.ils.res.in<br />Research Areas: Cancer, malaria, age diseases, stress biology, ecophysiology, plant molecular physiology, filariasis, tuberculosis, bio-perspecitve, agricultural biotechnology, bio-informatics.</p><p><br />National Institute of Science Education and Research &ndash; Bhubaneshwar<br />Institute of Physics Campus, Bhubaneswar, Orissa - 751 005,<br />e-mail : director@niser.ac.in<br />Web: www.niser.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics.</p><p><br />Regional Research Laboratory<br />Bhubaneswar 751 013, Orissa<br />Email: root@csrrlbhu.ren.nic.in<br />Web: www.icast.org.in/csir/rrl_bhu.html<br />Research Areas: Survey &amp; cultivation of aromatic, medicinal and other economic plants.</p><p><br />Utkal University<br />Vani Vihar, Bhubaneswar 751 004, Orissa<br />Web: www.utkaluniversity.org/<br />CHANDIGARH <br />Indian Institute of Science Education and Research &ndash;Mohali<br />Chandigarh<br />Email: webmaster@iisermohali.ac.in<br />Web: www.iisermohali.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology,<br />chemistry, math and physics</p><p><br />Institute of Microbial Technology<br />Sector 39&ndash;A, Chandigarh 160 036<br />Email: raghava@imtech.res.in<br />Web: www.imtech.res.in/<br />Research Areas: Molecular biology and microbial genetics,<br />animal cell/tissue culture and protein engineering.</p><p><br />Panjab University<br />Chandigarh 160 014<br />Email: pulib@puchd.ren.nic.in<br />Web: www.puchd.ac.in/</p><p><br />Postgraduate institute of Medical Education and Research<br />Sector-12, Chandigarh, 160 012<br />Email: pgimer@chd.nic.in<br />Web: pgimer.nic.in/<br />Research Areas: Obstetrics and gynaecology, psychiatry,<br />biochemistry, haematology, clinical parasitology etc.<br />CHENNAI <br />Indian Institute of Technology Madras<br />Chennai 600 036, Tamil Nadu<br />Email: tppro@acer.iitm.ernet.in<br />Web: www.iitm.ac.in<br />Research Areas: Engineering: Biotechnology.</p><p><br />University of Madras<br />University Centenary Building, Chepauk, Chennai 600 005, Tamil Nadu<br />Email: webmaster@unom.ac.in<br />Web: www.unom.ac.in/ <br />DARJEELING <br />University of North Bengal<br />Raja Rammohunpur, Darjeeling 734 430, West Bengal<br />Email:(Registrar): regnbu@dte.vsnl.net.in<br />Web: www.nbu.ac.in/<br />DELHI <br />All India Institute of Medical Sciences<br />New Delhi<br />Email: webmastr@aiims.ac.in<br />Web: www.aiims.ac.in/</p><p><br />Institute of Genomics and Integrative Biology<br />Delhi University Campus, Mall Road, Delhi 110 007<br />Email: info@igib.res.in<br />Web: www.igib.res.in/<br />Research Areas: Allergy and immunology, diagnostics, genetic engineering, bio-organics and high-tech reagents.</p><p><br />Indian Institute of Technology Delhi<br />Hauz Khas, New Delhi 110 016<br />Email: malhotra@admin.iitd.ernet.in<br />Web: www.iitd.ac.in<br />Research Areas: Engineering: Biochemical engineering &amp; biotechnology.<br />International Centre for Genetic Engineering and Biotechnology</p><p><br />ICGEB Campus, Aruna Asaf Ali Marg,<br />New Delhi 110 067<br />Web: www.icgeb.trieste.it/<br />Research Areas: Mammalian biology:<br />Virology immunology, malaria,<br />recombinant gene products,<br />Plant molecular biology, plant transformation,<br />insect resistance, plant resistance.</p><p><br />Jawaharlal Nehru University<br />New Delhi<br />Email: webmaster@mail.jnu.ac.in<br />Web: www.jnu.ac.in</p><p><br />National Centre for Plant Genome Research<br />JNU Campus, New Delhi<br />Email: tapas_s3@yahoo.co.in<br />Web: ncpgr.nic.in/<br />Research Areas: Nutritional, structural, and functional genomics of various plant systems.</p><p><br />National Institute of Immunology<br />Aruna Asaf Ali Marg, New Delhi 110 067<br />Web: www.nii.res.in/<br />Research Areas: Gene regulation, immunity &amp; infection, molecular design, reproduction &amp; development.</p><p><br />TERI University<br />Vasant Kunj, New Delhi - 110 070 / India<br />E-mail: registrar@teri.res.in<br />Web: www.teriuniversity.ac.in<br />Research Areas: Environmental Studies, Natural Resources Management, Climate Science and Policy, Plant Biotechnology</p><p><br />University of Delhi<br />University Road, Delhi 110 007<br />Email: webmaster@du.ac.in<br />Web: www.du.ac.in/<br />GOA <br />National Centre for Antarctic and Ocean Research<br />Headland Sada, Vasco-da-Gama 403 804, Goa<br />Email: info@ncaor.org<br />Research Areas: Co&ndash;ordination and implementation of the Indian Antarctic Programme.<br /> <br /> <br />National Institute of Oceanography<br />Dona Paula 403 004, Goa<br />Email: webmaster@darya.nio.org<br />Web: www.nio.org/<br />Research Areas: International geosphere-bio-sphere programme, marine biotechnology.<br />GURGAON <br />National Brain Research Centre<br />Near NSG Campus, Nainwal Mode, Manesar, Gurgaon, Haryana<br />Email: info@nbrc.ac.in<br />Web: www.nbrc.ac.in/<br />Research Areas: Brain research.<br />GUWAHATI <br />Indian Institute of Technology Guwahati<br />North Guwahati, Guwahati 781 039, Assam<br />Email: mcb@iitg.ernet.in<br />Web: www.iitg.ernet.in<br />Research Areas: Engineering: Biotechnology.<br /> <br /> <br />Gauhati University<br />Gopinath Bordoloi Nagar, Guwahati 781 014, Assam<br />Web: http://www.gauhati.ac.in/.<br />HYDERABAD <br />Centre for Cellular &amp; Molecular Biology<br />Uppal Road, Hyderabad 500 007, Andhra Pradesh<br />Email: (Director): lalji@ccmb.res.in<br />Web: www.ccmb.res.in/<br />Research Areas: Biophysics &amp; biochemistry, molecular biology, genetics &amp; evolution, biomedicines &amp; biotechnology.<br /> <br /> <br />Centre for DNA Fingerprinting and Diagnostics<br />CDFD, Bldg. 7, Gruhakalpa, 5-4-399/B, Nampally, Hyderabad - 500 001.<br />Email: director@cdfd.org.in<br />Web: www.cdfd.org.in/<br />Research Areas: Automated genome analysis, bacterial genetics, cancer biology, cell biology &amp; gene expression, computational biology, computational &amp; functional genomics, immunology, mammalian genetics, molecular genetics, molecular oncology, molecular virology, structural biology, transcription, developmental neuroscience and drosophila genetics.<br /> <br /> <br />Indian Institute of Chemical Technology<br />Uppal Road, Hyderabad 500 007, Andhra Pradesh<br />Email: kvr@iict.ap.nic.in, sampath@iict.ap.nic.in<br />Web: www.iictindia.org/<br />Research Areas: Pesticides, drugs, organic intermediates and fine chemicals.<br /> <br /> <br />LV Prasad Eye Intstitute<br />Hyderabad, Andhra Pradesh, India<br />Email: communications@lvpei.org<br />Web: www.lvpei.org/<br />LVPEI is a World Health Organization Collaborating Center for Prevention of Blindness. Equipped with cutting-edge technology and distinguished professionals in the field of Eye care<br /> <br /> <br />University of Hyderabad<br />P.O. Central University, Gachibowli, Hyderabad 500 046, Andhra Pradesh<br />Email: trctcs@uohyd.ernet.in<br />Web: www.uohyd.ernet.in/<br />IMPHAL <br />Institute of Bioresources and Sustainable Development<br />Takyelpat, Imphal 795 001, Manipur<br />Email: ibsd_imp@sancharnet.in, ibsd-imphal@man.nic.in<br />Web: ibsd-imphal.nic.in/<br />Research Areas: Conservation of biodiversity and sustainable utilisation of biodiversity.<br />ITANAGAR <br />North Eastern Regional Institute of Science and Technology<br />Itanagar, Nirjuli, Papumpare 791 109, Arunachal Pradesh<br />Email: dir@nerist.ernet.in<br />Web: www.nerist.ac.in/<br />Research Areas: Agricultural engineering, forestry.<br />JAIPUR <br />University of Rajasthan<br />Jaipur 320 004, Rajasthan<br />Email: info@uniraj.org<br />Web: www.uniraj.org/<br />JAMMU and KASHMIR <br />Regional Research Laboratory<br />Canal Road, Jammu 130 001, Jammu &amp; Kashmir<br />Email: (Director): qazi_gn@yahoo.com, root@csrrljm.ren.nic.in<br />Web: www.rrljammu.org/<br />Research Areas: Natural products &amp; organic chemistry, improvement &amp; cultivation of medicinal and aromatic plants, post harvest technology and applied microbiology &amp; mutation genetics.<br /> <br />University of Jammu<br />Jammu 180 006, Jammu &amp; Kashmir<br />Web: www.jammuuniversity.org/<br /> <br />University of Kashmir<br />Hazratbal,Srinagar-190006,Jammu and Kashmir<br />Email: info@kashmiruniversity.net<br />Web: http://www.kashmiruniversity.net/<br /> <br />Sher-i-Kashmir Institute of Medical Science (SKIMS)<br />Srinagar, Jammu and Kashmir<br />Email: skimsweb@gmail.com<br />Web: http://www.skims.ac.in/<br /> <br />Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST)<br />Shalimar Campus, Srinagar - 191121 Jammu and Kashmir<br />Email: skuastkashmir@gmail.com<br />Web: http://www.skuastkashmir.ac.in/<br />Research Areas: Agricultural Sciences, fisheries and veterinary sciences.<br />JORHAT <br />Regional Research Laboratory<br />Jorhat 785 006, Assam<br />Email: drrljt@csir.res.in, inform@csir.res.in<br />Web: jorhat.nic.in/rrl.htm<br />Research Areas: Agrochemicals, drugs and drug intermediates, organic chemistry, biochemistry.<br />KANPUR <br />Indian Institute of Technology Kanpur<br />GT Road, Kalyanpur, Kanpur 208 016, Uttar Pradesh<br />Email: infocell@iitk.ac.in<br />Web: www.iitk.ac.in/<br />Research Areas: Engineering: Biological sciences &amp; bioengineering.<br />KHARAGPUR <br />Indian Institute of Technology Kharagpur<br />Kharagpur 721 302, West Bengal<br />Email: (PRO): ashok@hijli.iitkgp.ernet.in<br />Web: www.iitkgp.ernet.in/<br />Research Areas: Engineering: Biotechnology.<br />KOCHI <br />Cochin University of Science and Technology<br />South Kalamessery, Kochi 682 022, Kerala<br />Email: webmaster@cusat.ac.in<br />Web: www.cusat.ac.in/.<br />KOLKATA <br />Bose Institute<br />93/1, Acharya Prafulla Chandra Road, Kolkata 700 009, West Bengal<br />Email: sidroy@bic.boseinst.ernet.in<br />Web: www.boseinstitute.org/<br />Research Areas: Bioinformatics &amp; computational biology, structure and functional dynamics of biomolecules, drug modeling, molecular genetics of microbes, transgenic plants etc.<br /> <br /> <br />Indian Institute of Chemical Biology<br />4, Raja S.C. Mullick Road, Jadavpur, Kolkata 700 032, West Bengal<br />Email: (Director): director@iicb.res.in<br />Web: www.iicb.res.in/<br />Research Areas: Natural products of medicinal, biological and industrial value, immunoassay techniques, tissue-targeted drug-delivery system.<br /> <br /> <br />Indian Institute of Science Education and Research &ndash;Kolkata<br />Mohanpur, Nadia, West Bengal<br />Web: www.iiserkol.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Indian Statistical Institute, Kolkata<br />203 Barrackpore Trunk Road, Kolkata 700 108, West Bengal<br />Email: postmaster@isical.ac.in<br />Web: www.isical.ac.in/<br />Research Areas: Agricultural and ecological research, biological anthropology, human genetics.<br /> <br /> <br />Jadavpur University<br />188 Raja S.C. Mallik Road, Kolkata 700 032, West Bengal<br />Email: registrar@jdvu.ac.in<br />Web: www.jadavpur.edu/<br /> <br /> <br />University of Calcutta<br />Kolkata 700 009, West Bengal<br />Web: www.kolkata.org/cu/<br />KURUKSHETRA <br />Kurukshetra University<br />Kurukshetra 136 119, Haryana<br />Email: jskadian@rediffmail.com<br />Web: kuk.ernet.in/<br />LUCKNOW <br />Birbal Sahni Institute of Palaeobotany<br />53 University Road, Lucknow, Uttar Pradesh<br />Email: director@bsip.res.in<br />Web: www.bsip-india.org/index.htm<br />Research Areas: Botanical palaeobotany: Morphotaxonomy, palaeoecology, palaeogeography, phylogeny and evolution.<br /> <br /> <br />Central Drug Research Institute<br />Chattar Manzil Palace, Post Box No. 173, Lucknow 226 001, Uttar Pradesh<br />Email: info@cdriindia.org<br />Web: www.cdriindia.org/<br />Research Areas: Development of contraceptives, new drugs for tropical diseases (malaria, filariasis, leishmaniasis), cardio-vascular and central nervous system disorders.<br /> <br /> <br />Indian Institute of Science Education and Research &ndash;Kolkata<br />Mohanpur, Nadia, West Bengal<br />Web: www.iiserkol.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Indian Statistical Institute, Kolkata<br />203 Barrackpore Trunk Road, Kolkata 700 108, West Bengal<br />Email: postmaster@isical.ac.in<br />Web: www.isical.ac.in/<br />Research Areas: Agricultural and ecological research, biological anthropology, human genetics.<br /> <br /> <br />Central Institute of Medicinal and Aromatic Plants<br />Lucknow 226 015, Uttar Pradesh<br />Email: director@cimap.res.in<br />Web: www.cimap.res.in/<br />Research Areas: Agrotechnologies for medicinal and aromatic plants, phytochemistry, plant physiology and biochemistry, pathology, genetics, entomology and pharmacognosy.<br /> <br /> <br />Industrial Toxicology Research Centre<br />Mahatma Gandhi Marg, P.O. Box No. 80, Lucknow 226 001, Uttar Pradesh<br />Email: info@itrcindia.org<br />Web: www.itrcindia.org/<br />Research Areas: Neurotoxicology, environmental health, immunotoxicology and environmental biotechnology.<br /> <br /> <br />National Botanical Research Institute<br />Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh<br />Email: p.pushpangadan@nbri.res.in<br />Web: www.nbri-lko.org/<br />Research Areas: Plant biotechnology, environmental sciences, taxonomy and ethnobotany, plant molecular biology.<br />MUMBAI <br />Advanced Centre for Treatment, Research and Education in Cancer (ACTREC)<br />Tata Memorial Centre, Navi Mumbai - 410 210<br />Web: www.actrec.gov.in/<br />Research Areas: Research investigations currently focus on molecular mechanisms of cancer, drug development and emerging therapies for treatment and prevention of cancer.<br /> <br /> <br />Bhabha Atomic Research Centre<br />Trombay, Mumbai 400 085, Maharashtra<br />Email: webmaster@magnum.barc.ernet.in<br />Web: www.barc.ernet.in/<br />Research Areas: Chemical and life sciences, nuclear agriculture.<br /> <br /> <br />Bombay Natural History Society<br />Hornbill House, Shaheed Bhagat Singh Road, Mumbai 400 023, Maharashtra<br />Email: bnhs@bom4.vsnl.net.in<br />Web: www.bnhs.org/<br /> <br /> <br />Indian Institute of Technology Bombay<br />Powai, Mumbai 400 076, Maharashtra<br />Email: registrar@iitb.ac.in<br />Web: www.iitb.ac.in/<br />Research Areas: Earth sciences; Science: Biology, chemistry, mathematics, physics.<br /> <br /> <br />Tata Institute of Fundamental Research<br />Homi Bhabha Road, Navy Nagar, Colaba, Mumbai 400 005.<br />Web: www.tifr.res.in/<br />Department of Biological Sciences: www.tifr.res.in/~dbs<br />Research Areas: TIFR is a multidisciplinary research organisation working in the area of Natural Sciences (Biology, Chemistry, and Physics), Mathematics and Computer Science.<br /> <br /> <br />University of Mumbai<br />Vidyanagari, Kalina, Santa Cruz (W), Mumbai 400 098, Maharashtra<br />Web: www.mu.ac.in/<br /> <br /> <br />National Botanical Research Institute<br />Rana Pratap Marg, Lucknow 226 001, Uttar Pradesh<br />Email: p.pushpangadan@nbri.res.in<br />Web: www.nbri-lko.org/<br />Research Areas: Plant biotechnology, environmental sciences, taxonomy and ethnobotany, plant molecular biology.<br />NAGPUR <br />National Environmental Engineering Research Institute<br />Nehru Marg, Nagpur 440 020, Maharashtra<br />Email: dirneeri@nagpur.dot.net.in<br />Web: www.neeri.nic.in/<br />Research Areas: Environmental biotechnology.<br />PUNE <br />Agharkar Research Institute<br />G.G. Agarkar Road, Pune 411 004, Maharashtra<br />Web: www.aripune.org/<br />Research Areas: Animal sciences, microbial sciences, plant sciences.<br /> <br /> <br />Indian Institute of Science Education and Research&ndash;Pune<br />Email: director@iiserpune.ac.in<br />Web: www.iiserpune.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics.<br /> <br /> <br />National Chemical Laboratory<br />Dr. Homi Bhabha Road, Pune 411 008, Maharashtra<br />Email: director@ems.ncl.res.in<br />Web: www.ncl-india.org/<br />Research Areas: biotechnology, biochemistry.&gt;<br /> <br /> <br />National Centre for Cell Sciences<br />NCCS Complex, Ganeshkhind, Pune 411 007, Maharashtra<br />Email: infonccs@giaspn01.vsnl.net.in<br />Web: www.nccs.res.in/<br />Research Areas: Cell biology, molecular biology, immunology, parasitology, hybridoma technology, tissue banking &amp; tissue engineering, regenerative biology, virology (HIV), cancer biology, diabetes, cryobiology transplantation, gene therapy.<br /> <br /> <br />University of Pune<br />Ganeshkhind Road, Pune 411 007, Maharashtra Telephone: 020-5601305<br />Email: Registrar): regis@unipune.ernet.in<br />Web: www.unipune.ernet.in/<br />PALAMPUR <br />Institute of Himalayan Bioresource Technology<br />Post Box No. 6, Palampur 176 061, Himachal Pradesh<br />Email: root@csihbt.ren.nic.in, director@ihbt.csir.res.in<br />Web: www.icast.org.in/csir/ihbt.html<br />Research Areas: Floriculture, tea sciences, biotechnology and natural plant products.<br />PATIALA <br />Punjabi University<br />Patiala 147 002, Punjab<br />Email: ucc@pbi.ac.in<br />Web: www.universitypunjabi.org/<br />PILANI <br />Birla Institute of Technology and Science<br />Vidhya Vihar Campus, Pilani, 333 031, Rajasthan<br />Email: mmsanand@bits-pilani.ac.in<br />Web: www.bits-pilani.ac.in/<br />ROORKEE <br />Indian Institute of Technology Roorkee<br />Roorkee 247 667, Uttaranchal<br />Email: (Registrar): regis@iitr.ernet.in<br />Web: www.iitr.ernet.in/<br />Research Areas: Engineering: Biotechnology.<br />SHANTINIKETAN <br />Visva-Bharati University<br />Santiniketan, Birbhum 731 235, West Bengal<br />Email: Root@vbharat.ernet.in<br />Web: www.visva-bharati.ac.in/<br />SHILLONG <br />North-Eastern Hill University<br />Umshing, Shillong 793 022, Meghalaya<br />Email: admin@nehu.ac.in<br />Web: www.nehu.ac.in/<br />SILCHAR <br />Assam University<br />P.O. Box 63, Silchar 788 011, Assam<br />Email: auliba@sancharnet.in, asokesen@sancharnet.in<br />Web: assamuniversity.nic.in/<br />TRIVANDUM <br />Indian Institute of Science Education and Research&ndash;Trivandum<br />Trivandrum, Kerala,India.<br />Web: www.iisertvm.ac.in/<br />Research Areas: All areas of basic sciences &ndash; Biology, chemistry, math and physics<br /> <br /> <br />Rajiv Gandhi Centre for Biotechnology<br />Thycaud P.O., Thiruvananthapuram 695 , Kerala<br />Email: info@rgcb.res.in<br />Web: rgcb.res.in/<br />Research Areas: Disease biology and molecular medicine, Plant biotechnology<br /> <br /> <br />Regional Research Laboratory<br />Industrial Estate P.O., Pappanamcode, Thiruvananthapuram 695 019, Kerala<br />Email: root@csrrltrd.ren.nic.in<br />Web: w3rrlt.csir.res.in/<br />Research Areas: Chemistry of natural products, agroprocessing, photochemical systems including solar energy conversion, analysis of pollutants and waste-water technology.<br /> <br />VARANASI <br />Banaras Hindu University<br />Varanasi 221 005, Uttar Pradesh<br />Email: webmaster@bhu.ac.in<br />Web: www.bhu.ac.in/index.html<br /> <br />Rajiv Gandhi Centre for Biotechnology<br />Thycaud P.O., Thiruvananthapuram 695 , Kerala<br />Email: info@rgcb.res.in<br />Web: rgcb.res.in/<br />Research Areas: Disease biology and molecular medicine, Plant biotechnology<br /> <br /> <br />Indian Council for Agricultural Research<br />Main Web site: www.icar.org.in/<br />Research Institutes under ICAR: www.icar.org.in/icar15.html<br /> <br /> <br />CSIR Laboratories<br />Main CSIR website&ndash;www.csir.res.in/</p><p>-------------------------------</p><p>Department of Atomic Energy<br />Main CSIR website&ndash;www.barc.ernet.in/<br /> <br /> <br />Department of Biotechnology<br />Main CSIR website&ndash;dbtindia.nic.in/index.asp</p><p>&nbsp;</p><p>Dept. of Science &amp; Technology<br />Main Website: Main Website: www.dst.gov.in/<br /> <br /> <br />Indian Council for Medical Research<br />Main Web site: icmr.nic.in/<br />Research Institutes under ICMR: icmr.nic.in/institute.htm#Permanent%20Institutes/Centres</p><p>Ministry of Environment and Forest<br />Main Web site: envfor.nic.in/<br />Research Institutes under ICAR: cyberjournalist.org.in/linksr.html</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33973/list-of-genome-announcement-notes-and-reporting-journals</guid>
	<pubDate>Wed, 26 Jul 2017 08:01:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33973/list-of-genome-announcement-notes-and-reporting-journals</link>
	<title><![CDATA[List of genome announcement, notes and reporting journals]]></title>
	<description><![CDATA[<p><span>Faced with an increasing number of articles describing DNA data and a need for more appropriate venues to present these data, some publishers and journals have responded by changing the structure and format of genome papers. Specifically, certain journals have started accepting very short manuscripts (500&ndash;1500 words) that present a new chromosome sequence, its GenBank accession number and little else. These pint-sized articles go by various names, such as genome reports, genome announcements, genome notes or genome letters</span><span>, but will be referred to here broadly as genome reports. Their short length and minimal number (or complete absence) of figures, tables and article subheadings are a significant departure from long-form genome papers, which typically span 8&ndash;10 journal pages, contain many supporting items and have formal introduction, methods, results and discussion sections.</span></p><p>Following are the list of journals publishing&nbsp;<span>pint-sized articles go by various names, such as genome reports, genome announcements, genome notes or genome letters</span><span>, but will be referred to here broadly as genome reports.</span></p><p>1. <strong>Genome Announcements</strong>, American Society for Microbiology, Genome announcement, Impact factor 1.3, &nbsp;A 500-word report stating that the genome of a particular organism (prokaryote, eukaryote or virus) has been sequenced and providing a citable record of the corresponding GenBank submission. Must include abstract but no text headings can be used except for &lsquo;Acknowledgments&rsquo; and &lsquo;References&rsquo;. Cannot include figures, tables or supplemental material to present data or analysis.</p><p>Link: https://mra.asm.org/</p><p>2. <strong>Genome Biology and Evolution</strong>, Oxford University Press, Genome report, Impact factor 4.2, Focused 1500-word papers (up to six tables or figures) that publish the main evolutionary message of new genome sequences as they become submitted to GenBank. May also contain specifically focused comparative analyses of previously published genomes that contain a substantial and novel insight of broadest evolutionary significance.</p><p>Link: https://academic.oup.com/gbe</p><p>3. <strong>Journal of Biotechnology</strong>, Elsevier, Genome announcement, Impact factor 2.9, A 500-word report announcing the availability of the completely annotated genome sequence of a biotechnologically relevant organism in the corresponding database (for eukaryotes, advanced draft genomes will also be considered). Articles can contain an Abstract, a brief report on the organism and its biotechnological relevance, a table summarizing the genome features, References and an Acknowledgement. Figures are generally not allowed.</p><p>Link: https://www.journals.elsevier.com/journal-of-biotechnology</p><p>4. <strong>Journal of Genomics</strong>, Ivyspring, Genome note, Impact factor N/A, A 1000-word report (10 reference limit; conclusions not permitted) describing novel data sets from high-throughput analysis of genotypes, phenotypes, gene expression, metabolomes, proteomes or genome assemblies.Standard metrics for data quality and the experimental design must be clearly reported.</p><p>Link: http://www.jgenomics.com/</p><p>5. <strong>Mem&oacute;rias do Instituto</strong>, Oswaldo Cruz Oswaldo Cruz Foundation, Genome announcement and highlight, Impact factor 1.6, Dedicated to publishing new genome information from eukaryote parasites, virus, bacteria and their respective vectors, as well as re-sequencing or comparative genome analyses. Should occupy no more than three printed pages including figures and/or tables.</p><p>Link: http://memorias.ioc.fiocruz.br/</p><p>6. <strong>Molecular Ecology Resources,</strong> Wiley, Genomic resources note, &nbsp;Impact factor 3.7, Short notes on newly assembled and annotated transcriptomes, genome fractions or whole genomes, and/or a library of SNP/SSR markers.Authors submit a short manuscript describing how the resource was developed and where the data can be accessed. Do not appear in journal as individual papers but are instead published as part of a summary article.</p><p>Link: https://onlinelibrary.wiley.com/journal/17550998</p><p>7. <strong>Standards in Genomic Science</strong>, BioMed Central (Springer), Short genome report, Impact factor 3.2,&nbsp;<span>Short (&sim;500-word) article on newly sequenced genome. Article format must follow guidelines and template (available from journal Web site) put forward by the SGS. Any manuscripts not using template or that are missing key figures, tables and/or references (as per the guidelines) will be returned to authors. Rationale of the content model is to provide information that is consistently and uniformly presented for rapid and easy consumption by both human and machine readers.&nbsp;</span></p><p><span>Link: https://standardsingenomics.biomedcentral.com/</span></p><p><span>8. <strong>3biotech</strong>, Springer,&nbsp;<span>Short genome report, Impact factor 1.3,&nbsp;</span><span>Short (&sim;500-word) article on newly sequenced genome. Article format must follow guidelines (available from journal Web site).&nbsp;<span>&nbsp;Genome of a particular organism (prokaryote, eukaryote or virus) has been sequenced and providing a citable record of the corresponding GenBank submission.</span></span></span></p><p><span><span><span>Link: https://link.springer.com/journal/13205</span></span></span></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33874/dna-testing-companies-around-the-globe</guid>
	<pubDate>Thu, 13 Jul 2017 04:44:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33874/dna-testing-companies-around-the-globe</link>
	<title><![CDATA[DNA testing companies around the globe !]]></title>
	<description><![CDATA[<p>It was realized in the 1940s that DNA molecules are passed down through the generations of a family. In 1953 Watson and Crick elucidated the chemical structure of this molecule as a twisted ladder (a &lsquo;helix&rsquo;) made of two strands. DNA occurs in all the cells of our body, it is our blueprint! The strands of DNA contain information in the form of a code, which in turn determines our individual traits and characteristics. This code, the genetic code, is the order of four types of DNA building block. When the two strands of DNA separate, each building block (&lsquo;base&rsquo;) accurately templates a corresponding base on the newly made strand of DNA so that information is not lost but is instead duplicated and preserved.</p><p>Testing for similarities between DNA (deoxyribonucleic acid) samples from two people allows family relationships to be established &ndash; or disproved &ndash; to an extraordinarily high degree of certainty. A common use for a DNA test is to establish if a man is the biological father of a child; this is known as a paternity test. However, there are other uses for the science of DNA testing (also called genotyping), these include forensic analysis of human DNA samples, and tracking relationships amongst domesticated animals.</p><p>The order in which the bases occur in DNA is referred to as the DNA sequence. Each person is unique and just as people differ in their fingerprints, they also have a unique and slightly different DNA sequence. Half of a person&rsquo;s DNA is received from their mother, and half is received from the father. However, while fingerprints have no value for establishing family relationships, the minor variations in DNA sequence are extraordinarily useful for this purpose. All cells of our body contain DNA, skin cells from the lining of the cheek provide a simple and convenient source of material.</p><p>DNA is purified from these cells and the minor variations are read out as a type of bar-code by a machine. When the net DNA &lsquo;barcodes&rsquo; from family members are lined up next to each other it becomes clear when a child is related to biological parents because half the stripes in the bar-code like signature will line up with those of the mother, and half will line up with those of the father. On the other hand, in the absence of a biological relationship, the DNA signatures from a child and from a potential parent are not found to have 50% in common. It may be appreciated that DNA testing is the most convenient and scientifically accurate method of determining relationships between people.</p><p>Following are the list of companies who qssist in DNA testing:</p><h2><span>DNA testing companies</span></h2><ul>
<li><a href="https://isogg.org/wiki/23andMe" title="23andMe">23andMe</a>&nbsp;(admixture, adoption, deep ancestry, genealogy) (health and trait reports also available in some countries)</li>
<li><a href="https://24genetics.com/">24 genetics</a>&nbsp;(admixture, exome sequencing, health, paternity, pharmacogenetics, whole genome sequencing) A company catering for the Spanish market</li>
<li><a href="http://www.africanancestry.com/">African Ancestry</a>&nbsp;(deep ancestry)</li>
<li><a href="http://www.africandna.com/">AfricanDNA</a>&nbsp;(<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA</a>&nbsp;affiliate) (admixture, deep ancestry, genealogy)</li>
<li><a href="https://isogg.org/wiki/AncestrybyDNA" title="AncestrybyDNA">AncestrybyDNA</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/AncestryDNA" title="AncestryDNA">AncestryDNA</a>, a subsidiary of Ancestry.com (admixture, adoption, genealogy)</li>
<li><a href="https://atlas.ru/">Atlas Biomed</a>&nbsp;(deep ancestry, diet, health and traits, sport) A test catering for the Russian market</li>
<li><a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a>&nbsp;(formerly Ethnoancestry) (admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/Centrillion_Biosciences" title="Centrillion Biosciences">Centrillion Biosciences</a>&nbsp;(aka TribeCode) (admixture, deep ancestry)</li>
<li>CymruDNAWales - see&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a></li>
<li><a href="https://www.dantelabs.com/">Dante Labs</a>&nbsp;(exome sequencing, health, whole genome sequencing) A test aimed at the European market</li>
<li><a href="http://www.dnaancestry.ae/">DNA Ancestry and Family Origin</a>&nbsp;(<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA</a>&nbsp;affiliate in the Middle East) (admixture, adoption, deep ancestry, full mtDNA sequencing, genealogy)</li>
<li><a href="http://dnaconsultants.com/">DNA Consultants</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/DNA_Tribes" title="DNA Tribes">DNA Tribes</a>&nbsp;(admixture)</li>
<li><a href="https://www.dna-worldwide.com/">DNA Worldwide</a>&nbsp;(formerly a&nbsp;<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA partner</a>. See also&nbsp;<a href="https://www.livingdna.com/">Living DNA</a>)</li>
<li>Ethnoancestry - see&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a></li>
<li><a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">Family Tree DNA</a>&nbsp;(admixture, adoption, deep ancestry, full mtDNA sequencing, genealogy, Y chromosome sequencing)</li>
<li><a href="https://isogg.org/wiki/Full_Genomes_Corporation" title="Full Genomes Corporation">Full Genomes Corporation</a>&nbsp;(whole genome sequencing, Y-chromosome sequencing)</li>
<li><a href="https://isogg.org/wiki/Gene_by_Gene" title="Gene by Gene">Gene by Gene</a>&nbsp;- the parent company of&nbsp;<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">Family Tree DNA</a>&nbsp;which now incorporates the companies previously known as DNA Traits, DNA DTC and DNA Findings (research, health, exome sequencing, whole genome sequencing)</li>
<li><a href="https://isogg.org/wiki/Genebase" title="Genebase">Genebase</a>&nbsp;(deep ancestry, genealogy)</li>
<li><a href="https://www.genotek.ru/">GenoTek</a>&nbsp;(admixture, genealogy, diet and fitness, family planning, health, talents and sports) A company catering for the Russian market</li>
<li><a href="https://isogg.org/wiki/Genographic_Project" title="Genographic Project">Genographic Project</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="http://www.genos.co/">Genos Research Inc</a>&nbsp;(DTC whole exome sequencing; consumer focused healthcare big data spin out from Complete Genomics; Note: no genetic genealogy focus or tools)</li>
<li><a href="http://www.guardiome.com/">Guardiome</a>&nbsp;(admixture, whole genome sequencing and interpretation)</li>
<li><a href="https://www.helix.com/">Helix</a>&nbsp;(exome sequencing) US supplier of the&nbsp;<a href="https://isogg.org/wiki/Genographic_Project" title="Genographic Project">Genographic Project</a>&nbsp;Geno 2.0 Next Generation test</li>
<li><a href="http://www.igenea.com/">iGENEA</a>&nbsp;(<a href="https://isogg.org/wiki/Family_Tree_DNA" title="Family Tree DNA">FTDNA</a>&nbsp;affiliate) (admixture, deep ancestry, genealogy)</li>
<li>IrelandsDNA - See&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a>&nbsp;(formerly Ethnoancestry)</li>
<li><a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">MyDNA Global</a>&nbsp;- a new name for&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a></li>
<li><a href="https://www.livingdna.com/">Living DNA</a>&nbsp;(admixture, deep ancestry) See also&nbsp;<a href="https://www.dna-worldwide.com/">DNA Worldwide</a></li>
<li><a href="https://www.myheritage.com/dna">MyHeritage DNA</a>&nbsp;(admixture, genealogy)</li>
<li><a href="https://isogg.org/wiki/Oxford_Ancestors" title="Oxford Ancestors">Oxford Ancestors</a>&nbsp;(deep ancestry)</li>
<li><a href="http://www.rootsforreal.com/">Roots for Real</a>&nbsp;(admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/ScotlandsDNA" title="ScotlandsDNA">ScotlandsDNA</a>&nbsp;- (formerly Ethnoancestry) (admixture, deep ancestry)</li>
<li><a href="https://isogg.org/wiki/Sorenson_Genomics" title="Sorenson Genomics">Sorenson Genomics</a>&nbsp;(laboratory services)</li>
<li><a href="http://www.suregenomics.com/">Sure Genomics</a>&nbsp;(whole genome sequencing and interpretation)</li>
<li>TribeCode See&nbsp;<a href="https://isogg.org/wiki/Centrillion_Biosciences" title="Centrillion Biosciences">Centrillion Biosciences</a></li>
<li><a href="https://www.veritasgenetics.com/">Veritas Genetics</a>&nbsp;(whole genome sequencing and interpretation)</li>
<li><a href="http://xcode.in/">Xcode</a>&nbsp;(Diet and Fitness, Precision medicine, Genotyping, Sequencing, Interpretation)</li>
<li>YorkshiresDNA - See&nbsp;<a href="https://isogg.org/wiki/BritainsDNA" title="BritainsDNA">BritainsDNA</a>&nbsp;(formerly Ethnoancestry)</li>
<li><a href="https://www.wegene.com/">WeGene</a>&nbsp;(admixture, deep ancestry, health, sports, traits) A test tailored for the East Asian market</li>
<li><a href="https://isogg.org/wiki/YSEQ" title="YSEQ">YSEQ</a>&nbsp;(custom Y-SNPs, Y-STRs, SNP panels, whole genome sequencing)</li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33629/list-of-universities-offering-bachelor-master-or-phd-bioinformatics-degree-in-malaysia</guid>
	<pubDate>Thu, 22 Jun 2017 01:34:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33629/list-of-universities-offering-bachelor-master-or-phd-bioinformatics-degree-in-malaysia</link>
	<title><![CDATA[List of universities offering Bachelor,  Master or PhD bioinformatics degree in Malaysia]]></title>
	<description><![CDATA[<p>Bioinformatics is a newly emerging interdisciplinary research area, which may be defined as the ―interface between biological and computational sciences. Most of the Bioinformatics work that is done can be described as analyzing biological data, although a growing number of projects deal with the organization of biological information. The global Bioinformatics industry has grown at a double-digit growth rate in the past and is expected to follow the same pattern in the next four years. US remains the largest market in the world, but Asia-Pacific countries, particularly India and China, are witnessing the fastest growth and are anticipated to emerge as the dominating forces in future. The Comparison of Bioinformatics Industry between Malaysia, India and other countries&nbsp;are discussed in this&nbsp;<span>http://ijbssnet.com/journals/Vol.%202_No._10;_June_2011/11.pdf paper.</span></p><p>Bioinformatics is full of opportunities. The sector is poised to open new avenues for the other related sectors also. But the biggest opportunity area in the Bioinformatics market will be in the drug discovery sector. Reduction of both the cost and time taken to discover a new drug due to fast development in the Bioinformatics tools and software zone is also making drug discovery an attractive field to venture in. Malaysian bioinformatics growth and future are discuss in this https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723929/ paper.&nbsp;Keeping all such inportance in mind, following universities in Malaysia offering bioinformatics cources:</p><p><strong>3 program(s) at AIMST University<strong>, Malaysia</strong></strong></p><p>Master of Science in Biotechnology (MSc) - Bioinformatics by Research</p><p>Master of Science (M.Sc) in Medical Microbiology (Bioinformatics) by Research</p><p>Doctor of Philosophy in Biotechnology (PhD) - Bioinformatics by Research</p><p>&nbsp;</p><p><strong>1 program(s) at INTI International University and Colleges<strong>, Malaysia</strong></strong></p><p>American Degree Transfer Program (Biosciences) in Bioinformatics</p><p>&nbsp;</p><p><strong>3 program(s) at Management and Science University (MSU)<strong>, Malaysia</strong></strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>1 program(s) at Multimedia University (MMU)<strong>, Malaysia</strong></strong></p><p>Bachelor of Science (Honours) Bioinformatics</p><p>&nbsp;</p><p><strong>1 program(s) at Universiti Industri Selangor (UNISEL) Bestari Jaya Campus<strong>, Malaysia</strong></strong></p><p>Bachelor of Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>2 program(s) at Universiti Malaysia Sabah (UMS)<strong>, Malaysia</strong></strong></p><p>PhD - Doctor of Philosophy in Bioinformatics (By Research)</p><p>MSc - Master of Science in Bioinformatics (By Research)</p><p>&nbsp;</p><p><strong>6 program(s) at Universiti Putra Malaysia (UPM)<strong>, Malaysia</strong></strong></p><p>MSc - Master of Science in Bioinformatics by Research</p><p>Master of Science in Bioinformatics and System Biology by Research</p><p>Master of Science (M.Sc) in Bioinformatics and Systems Biology (With Thesis)</p><p>PhD - Doctor of Philosophy in Bioinformatics by Research</p><p>PhD - Doctor of Philosophy in Bioinformatics and Systems Biology (With Thesis)</p><p>PhD - Doctor of Philosophy in Bioinformatics and System Biology by Research</p><p>&nbsp;</p><p><strong>1 program(s) at Universiti Selangor (UNISEL)<strong>, Malaysia</strong></strong></p><p>Bachelor of Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>3 program(s) at Universiti Teknologi Malaysia (UTM)<strong>, Malaysia</strong></strong></p><p>M.Sc - Master of Science (Bioscience) in Bioinformatics Research Group (BIRG) By Research</p><p>PhD - Doctor of Philosophy (Bioscience) in Bioinformatics Research Group (BIRG) By Research</p><p>Bachelor of Computer Science (BioInformatics)</p><p>&nbsp;</p><p><strong>4 program(s) at University of Malaya (UM)<strong>, Malaysia</strong></strong></p><p>MSc - Master of Science in Bioinformatics by Research</p><p>Master in Bioinformatics by Coursework</p><p>PhD - Doctor of Philosophy in Bioinformatics by Research</p><p>Bachelor of Science (BSc) in Bioinformatics</p><p>&nbsp;</p><p><strong>3 program(s) at Perdana University<strong>, Malaysia</strong></strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>3 program(s) at&nbsp;Monash University, Malaysia</strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><span>The real bioinformatics scope lies if there are research labs which work in this field. One has to take account of that. If so then try to get information of those labs and visit them to get a hang of the work they pursue. For detail Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges are discussed in&nbsp;<span>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723929/ paper.</span></span></p>]]></description>
	<dc:creator>sahabuddin</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33617/list-of-universities-offering-bachelor-or-master-bioinformatics-degree-in-pakistan</guid>
	<pubDate>Wed, 21 Jun 2017 04:20:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33617/list-of-universities-offering-bachelor-or-master-bioinformatics-degree-in-pakistan</link>
	<title><![CDATA[List of universities offering Bachelor or Master bioinformatics degree in Pakistan]]></title>
	<description><![CDATA[<p>There are a lot of universities offering Bachelor or Master degree in Pakistan. Following are the list of few intitute/universities</p><p>Bachelor/ BS Bioinformatics at<br />1. Al-khair University, Bhimber<br />2. Government College University, Faisalabad<br />3. University Of Agriculture, Faisalabad<br />4. Comsats Institute Of Information Technology [isb], Islamabad<br />5. International Islamic University, Islamabad<br />6. Quaid-e-azam University, Islamabad<br />7. Khushal Khan Khattak University, Karak<br />8. Virtual University Of Pakistan, Lahore<br />9. Virtual University Of Pakistan, Lahore<br />10. Hazara University, Mansehra<br />11. Shaheed Benazir Bhutto Women University, Peshawar<br />12. Comsats Institute Of Information Technology, Sahiwal<br />13. Capital University Of Science And Technology, Islamabad<br />14. Foundation University, Islamabad<br />15. Baqai Medical University/hospital, Karachi<br />16. Institute Of Business And Technology(main Campus), Karachi<br />17. Sir Syed University Of Engineering &amp; Technology, Karachi<br />18. Forman Christian College, Lahore<br />19. Qarshi University (lhr), Lahore<br />20. The Superior University, Lahore<br />21. University Of Management And Technology, Lahore<br />22. Federal Institute Of Health Sciences, Lahore<br />23. Shaheed Benazir Bhutto Women University Peshawar, Sub Campus, Swabi<br />24. Government Postgraduate College ( Mandian), Abbottabad<br />25. Federal Institute Of Health Sciences, Multan<br />26. Fedral Institute Of Health Sciences, Muzaffarabad<br />27. The Limit Institution Of Health Sciences, Sahiwal</p><p><br />Master/ MS Bioinformatics cources at<br />1. Government College University, Faisalabad<br />2. Comsats Institute Of Information Technology [isb], Islamabad<br />3. International Islamic University, Islamabad<br />4. National University Of Science &amp; Technology, Islamabad<br />5. Quaid-e-azam University, Islamabad<br />6. University Of Sindh, Jamshoro<br />7. Virtual University Of Pakistan, Lahore<br />8. Hazara University, Mansehra<br />9. Shaheed Benazir Bhutto Women University, Peshawar<br />10. Capital University Of Science And Technology, Islamabad<br />11. Cecos University Of Information Tech. &amp; Emerging Sciences, Peshawar</p><p>The real bioinformatics scope lies if there are research labs which work in this field. One has to take account of that. If so then try to get information of those labs and visit them to get a hang of the work they pursue.</p><p>There is a huge buzz of precision medicine in light of genomics all around the world. One should also try to see how genomics infrastructure is built up or standing in Pakistan. If research labs having collaboration with hospitals employ genomics then one must also visit such labs. This will bring new avenues in healthcare advances. Not only it opens up the wealth of knowledge one can make out of genomics study but will also advance the critical thinking of therapies.</p><p>So I would encourage to target research labs working in the fields and also get information of hospitals employing genomics, this will give you an overall understanding of the fields demand in your country.</p>]]></description>
	<dc:creator>Reshma Khatun</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33372/fellowship-opportunities-for-indian-researchers</guid>
	<pubDate>Thu, 01 Jun 2017 05:42:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33372/fellowship-opportunities-for-indian-researchers</link>
	<title><![CDATA[Fellowship Opportunities for Indian Researchers]]></title>
	<description><![CDATA[<p>Fellowships are structured to provide significant work experiences, and fellows are often expected to take on a great deal of responsibility quickly. Generally, fellows are provided with unique experiences that are not typically available to someone starting out in an entry-level position. This experiential learning component varies depending upon the fellowship program<strong>.</strong></p><p><strong>Ramalingaswamy Re-entry Fellowship</strong><br />Welcoming Indian scientists working abroad back to our institutions..</p><p><strong>TATA Innovation Fellowships</strong><br />Promotes innovations towards path-breaking solutions for major challenges..</p><p><strong>TWAS fellowships</strong><br />For doctorate &amp; post-doctorate students from developing countries at Indian institutions..</p><p><strong>Cutting-Edge Research Enhancement and Scientific Training (CREST) Award</strong><br />Granted to biotech researchers for advanced scientific training abroad..</p><p><strong>Wellcome Trust/DBT India Alliance</strong><br />Building excellence among Indian bio-medical scientists by supporting future leaders..</p><p>More at http://www.dbtindia.nic.in/funding-mechanism/fellowships-for-scientists/</p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33306/ancestral-sequence-reconstruction-asr-or-ancestral-genesequence-reconstructionresurrection-tools-to-study-molecular-evolution</guid>
	<pubDate>Tue, 30 May 2017 04:20:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33306/ancestral-sequence-reconstruction-asr-or-ancestral-genesequence-reconstructionresurrection-tools-to-study-molecular-evolution</link>
	<title><![CDATA[Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection tools to study molecular evolution]]></title>
	<description><![CDATA[<p><span><strong>Ancestral sequence reconstruction</strong><span>&nbsp;(</span><strong>ASR</strong><span>) &ndash; also known as&nbsp;</span><strong>ancestral gene</strong><span>/</span><strong>sequence reconstruction</strong><span>/</span><strong>resurrection</strong><span>&nbsp;&ndash; is a technique used in the study of&nbsp;</span>molecular evolution<span>. The method consists of the synthesis of an ancestral&nbsp;</span>gene<span>&nbsp;and expression of the corresponding ancestral&nbsp;</span>protein<span>.&nbsp;</span><sup id="cite_ref-thornton_1-0"><a href="https://en.wikipedia.org/wiki/Ancestral_sequence_reconstruction#cite_note-thornton-1"></a></sup><span>The idea of protein 'resurrection' was suggested in 1963 by Pauling and Zuckerkandl.</span><sup id="cite_ref-2"><a href="https://en.wikipedia.org/wiki/Ancestral_sequence_reconstruction#cite_note-2"></a></sup><span>&nbsp;Some early efforts were made in the eighties-nineties, led by the laboratory of&nbsp;</span>Steven A. Benner<span>, showing the potential of this technique &ndash; one that only started to be fulfilled in the post-genomic era.</span><sup id="cite_ref-3"><a href="https://en.wikipedia.org/wiki/Ancestral_sequence_reconstruction#cite_note-3"></a></sup><span>&nbsp;Thanks to the improvement of algorithms and of better sequencing and synthesis techniques, the method was developed further in the early 2000s to allow the resurrection of a greater variety of and much more ancient genes.</span><sup id="cite_ref-4"><a href="https://en.wikipedia.org/wiki/Ancestral_sequence_reconstruction#cite_note-4"></a></sup><span>&nbsp;Over the last decade, ancestral protein resurrection has developed as a strategy to reveal the mechanisms and dynamics of protein evolution.&nbsp;</span></span></p><p><img src="https://upload.wikimedia.org/wikipedia/commons/thumb/e/e4/ASR_phylogeny.png/510px-ASR_phylogeny.png" alt="image" width="610" height="435" style="border: 0px; border: 0px;"></p><p><span>Following are the list of&nbsp;</span><strong style="font-size: 12.8px;">Ancestral /sequence/ reconstruction</strong><span>&nbsp;(</span><strong style="font-size: 12.8px;">ASR</strong><span>) tools:&nbsp;</span></p><p><a href="http://www.bx.psu.edu/miller_lab/car/" target="_blank" title="To inferCars official website"><span>inferCars</span></a></p><p><span><span><span><span><span>Reconstructs contiguous regions of an ancestral genome. Given information about adjacencies between conserved segments in each modern species, our goal is to infer segment order in the ancestral genome. To get a clean and precise statement of the problem, we formalize it using graph theory. We develop an algorithm that identifies a most parsimonious scenario for the history of each individual adjacency, although the whole-genome prediction is not guaranteed to optimize traditional measures like the number of breakpoints. We introduce weights to the graph edges to model the reliability of each adjacency.</span></span></span></span></span></p><p><span><span><a href="http://paleogenomics.irmacs.sfu.ca/ANGES/" target="_blank" title="To ANGES official website">ANGES</a>:</span><a href="http://paleogenomics.irmacs.sfu.ca/ANGES/" target="_blank" title="To ANGES official website">reconstructing ANcestral GEnomeS maps</a></span></p><p><span><span><span><span><span><span>A suite of Python programs that allows reconstructing ancestral genome maps from the comparison of the organization of extant-related genomes. ANGES can reconstruct ancestral genome maps for multichromosomal linear genomes and unichromosomal circular genomes. It implements methods inspired from techniques developed to compute physical maps of extant genomes.</span></span></span></span></span></span></p><p><a href="http://virulence.molgen.mpg.de/cocos/" target="_blank" title="To Cocos official website"><span>Cocos</span></a></p><p><span><span><span><span><span><span><span>Constructs phylogenies of multi-domain proteins. With a given species tree and domain phylogenies, the procedure infers the composition of ancestral multi-domain proteins. Cocos implements and extend a suggested algorithmic approach by Behzadi and Vingron in an easy-to-use program. Such method could be applied to reconstruction of partial homologous units such as bacterial operons or protein complexes.</span></span></span></span></span></span></span></p><p><a href="https://github.com/msrosenberg/MySSP" target="_blank" title="To MySSP official website"><span>MySSP</span></a></p><p><span><span><span><span><span><span><span><span>Constructs an initial DNA sequence at the root of the tree and simulates evolution across the tree using a variety of common models of DNA evolution. MySSP is a program for the simulation of DNA sequence evolution across a phylogenetic tree. It is designed for large-scale studies, including simulation of multiple replicates and outputs sequences into NEXUS, MEGA, or FASTA formats. MySSP has a fairly simple graphical user interface (GUI) for basic use, but also has a specialized batch script interpreter to allow for more complicated or large-scale simulations.</span></span></span></span></span></span></span></span></p><p><span><span><a href="http://www.cs.cmu.edu/~ckingsf/software/parana/" target="_blank" title="To PARANA official website">PARANA</a>:&nbsp;</span><a href="http://www.cs.cmu.edu/~ckingsf/software/parana/" target="_blank" title="To PARANA official website">Parsimonious Ancestral Reconstruction And Network Analysis</a></span></p><p><span><span><span><span><span><span><span><span><span>Performs parsimony based inference of ancestral biological networks. Given multiple extant networks and phylogenetic information relating extant nodes, PARANA finds a parsimonious set of ancestral interaction events (edge gains and losses) which explain the extant networks. The framework adopted by PARANA is able to represent network evolution under models that support gene duplication and loss and independent interaction gain and loss. The method works on both directed and undirected networks and can incorporate asymmetric interaction gain and loss costs. In contrast to previous approaches, PARANA does not require knowing the relative ordering of unrelated duplication events and thus, works on phylogenetic trees even where branch lengths are not provided.</span></span></span></span></span></span></span></span></span></p><p><span><span><a href="http://www-labs.iro.umontreal.ca/~mabrouk/" target="_blank" title="To GapAdj official website">GapAdj</a>:&nbsp;</span><a href="http://www-labs.iro.umontreal.ca/~mabrouk/" target="_blank" title="To GapAdj official website">Gapped Adjacencies</a></span></p><p><span><span><span><span><span><span><span><span><span><span>A synteny-based method that is flexible enough to handle a model of evolution involving whole genome duplication events, in addition to rearrangements, gene insertions, and losses. Ancestral relationships between markers are defined in term of Gapped Adjacencies, i.e. pairs of markers separated by up to a given number of markers. It improves on a previous restricted to direct adjacencies, which revealed a high accuracy for adjacency prediction, but with the drawback of being overly conservative, i.e. of generating a large number of contiguous ancestral regions (CARs).</span></span></span></span></span></span></span></span></span></span></p><p><a href="http://ancestors.bioinfo.uqam.ca/"><span><span><span><span><span><span><span><span><span><span>ANCESTOR</span></span></span></span></span></span></span></span></span></span></a></p><p><span><span><span><span><span><span><span><span><span><span><span>A web server allowing one to easily and quickly perform the last three steps of the ancestral genome reconstruction procedure. Ancestors implements several alignment algorithms, an indel maximum likelihood solver and a context-dependent maximum likelihood substitution inference algorithm. The results presented by the server include the posterior probabilities for the last two steps of the ancestral genome reconstruction and the expected error rate of each ancestral base prediction.</span></span></span></span></span></span></span></span></span></span></span></p><p><a href="http://bioinfo.lifl.fr/procars/" target="_blank" title="To ProCARs official website"><span>ProCARs</span></a></p><p>Reconstructs ancestral gene orders as contiguous ancestral regions (CARs) with a progressive homology-based method. ProCARs runs from a phylogeny tree (without branch lengths needed) with a marked ancestor and a block file. This homology-based method is based on iteratively detecting and assembling ancestral adjacencies, while allowing some micro-rearrangements of synteny blocks at the extremities of the progressively assembled CARs. The method starts with a set of blocks as the initial set of CARs, and detects iteratively the potential ancestral adjacencies between extremities of CARs, while building up the CARs progressively by adding, at each step, new non-conflicting adjacencies that induce the less homoplasy phenomenon. The species tree is used, in some additional internal steps, to compute a score for the remaining conflicting adjacencies, and to detect other reliable adjacencies, in order to reach completely assembled ancestral genomes.</p><p><a href="http://fastml.tau.ac.il/" target="_blank" title="To FastML official website"><span>FastML</span></a></p><p>A user-friendly tool for the reconstruction of ancestral sequences. FastML implements various novel features that differentiate it from existing tools: (i) FastML uses an indel-coding method, in which each gap, possibly spanning multiples sites, is coded as binary data. FastML then reconstructs ancestral indel states assuming a continuous time Markov process. FastML provides the most likely ancestral sequences, integrating both indels and characters; (ii) FastML accounts for uncertainty in ancestral states: it provides not only the posterior probabilities for each character and indel at each sequence position, but also a sample of ancestral sequences from this posterior distribution, and a list of the k-most likely ancestral sequences; (iii) FastML implements a large array of evolutionary models, which makes it generic and applicable for nucleotide, protein and codon sequences; and (iv) a graphical representation of the results is provided, including, for example, a graphical logo of the inferred ancestral sequences.</p><p><a href="http://rth.dk/resources/maxAlike/" target="_blank" title="To maxAlike official website"><span>maxAlike</span></a></p><p>Reconstructs a genomic sequence for a specific taxon based on sequence homologs in other species. The input is a multiple sequence alignment and a phylogenetic tree that also contains the target species. For this target species, the algorithm computes nucleotide probabilities at each sequence position. Consensus sequences are then reconstructed based on a certain confidence level.</p><p><span><span><a href="http://www.geneorder.org/server.php" target="_blank" title="To MLGO official website">MLGO</a>:&nbsp;</span><a href="http://www.geneorder.org/server.php" target="_blank" title="To MLGO official website">Maximum Likelihood for Gene Order Analysis</a></span></p><p>A web tool for the reconstruction of phylogeny and/or ancestral genomes from gene-order data. MLGO was designed for analysis of large-scale genomic changes including not only rearrangements but also gene insertions, deletions and duplications. MLGO can be used to infer a phylogeny from genome rearrangement and gene order data, and can also obtain an estimation of ancestral genomes, given an input tree. MLGO takes the advantage of binary encoding on gene-order data, supports a fairly general model of genomic evolution (rearrangements plus duplications, insertions, and losses of genomic regions), and successfully accommodates itself into the framework of maximized likelihood.</p><p>Image Reference : Wiki</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</guid>
	<pubDate>Wed, 10 May 2017 04:51:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/32587/ten-international-scholarships-for-indian-biotechnology-and-bioinformatics-students</link>
	<title><![CDATA[Ten International Scholarships for Indian Biotechnology and Bioinformatics Students]]></title>
	<description><![CDATA[<p>Wherever you go around the world, Indian students are in demand. With countries such as Canada and Australia providing huge incentives to Indian students to lure them to their shores, there are many institutions around the world that offer scholarships exclusively to Indian students. Historically these scholarships tend to be aimed towards Masters and PhD programmes however on the rise are scholarships for undergraduate students. Student World Online takes a look at ten international scholarships for Indian undergraduate students abroad.</p><p><br /><span><strong>1.&nbsp;</strong></span><strong><a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship"><span>TATA SCHOLARSHIP</span></a></strong>&nbsp;- Cornell University, New York State, USA<br />Tata, the Indian multinational conglomerate company, have a foundation known as the Tata Education &amp; Development Trust which has&nbsp;<span style="text-decoration: underline;"><a href="http://www.news.cornell.edu/stories/2008/10/tata-trust-gives-50-million-endowment-cornell" target="_blank">endowed a multi million dollar sum to Cornell University</a></span>&nbsp;to provide undergraduate scholarships to 20 Indian students every year. &nbsp;In another example of supporting American universities, the Tata group also pledged US$50 million to Harvard University in recent years, whose executive management programme&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Ratan_Tata" target="_blank">Ratan Tata</a></span>&nbsp;attended in the 1970s. &nbsp;<a href="http://admissions.cornell.edu/apply/international-students/tata-scholarship" target="_blank"><span><span style="text-decoration: underline;">Read more...&nbsp;</span></span></a>&nbsp;<br /><br /><strong><span>2.</span></strong>&nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><strong><span>BRADMAN FOUNDATION SCHOLARSHIP</span></strong></a>&nbsp;- University of Wollongong, Australia.<br />Named after Australia's cricket legend&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Donald_Bradman" target="_blank">Donald Bradman</a></span>, the&nbsp;<span style="text-decoration: underline;"><a href="https://www.uow.edu.au/content/groups/public/@web/@unia/documents/doc/uow145334.pdf" target="_blank">UOW Bradman Foundation Scholarship</a></span>&nbsp;was launched in 2012, with the help of Adam Gilchrist no less, to offer one successful Indian student each year a 50% reduction in tuition fees. &nbsp;<a href="http://www.uow.edu.au/future/international/apply/scholarships/UOW135799.html" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a>&nbsp;&nbsp;</p><p><span><strong>3.&nbsp;</strong></span><strong><a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span>HUAWEI MAITREE SCHOLARSHIPS</span></a></strong>&nbsp;- Various Universities, China<br />Along with Tata, Huawei are the other huge corporation to be featured. &nbsp;China's massive telecoms equipment vendor are involved in these scholarships offered to Indian students studying in China. &nbsp;In 2013 there are 10 generous scholarships available which provide full tuition fees and living expenses. &nbsp;The courses on which the scholarships are offered include Science and Technology courses, Social Sciences and Culture and Development courses. &nbsp;<a href="http://www.huaweischolarships.org/about_scholar.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>4.&nbsp;</strong></span><strong><a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span>DR. MANMOHAN SINGH SCHOLARSHIPS</span></a></strong>&nbsp;- Cambridge University, England, UK<br />These scholarships have been designed to help budding Indian minds follow in the footsteps of&nbsp;<span style="text-decoration: underline;"><a href="http://pmindia.nic.in/" target="_blank">Indian prime minister Manmohan Singh</a></span>&nbsp;by studying at the prestigious Cambridge University. &nbsp;The scholarships can be applied to any undergarduate course (with the two exceptions of medicine and veterinary science) and cover everything, i.e. tuition and college fees, living expenses and an additional grant to go towards travel expenses. &nbsp;<a href="http://www.britishcouncil.in/study-uk/dr-manmohan-singh-scholarships-2013" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>5.&nbsp;</strong></span><strong><a href="http://www.oxbridgeindia.com/scholarship.php"><span>OXFORD AND CAMBRIDGE SOCIETY OF INDIA</span></a></strong>&nbsp;- Oxford &amp; Cambridge Universities, England, UK<br />As the name might suggest, these are scholarships available for students wishing to study at Oxford or Cambridge (cleverly known together as&nbsp;<span style="text-decoration: underline;"><a href="http://en.wikipedia.org/wiki/Oxbridge" target="_blank">Oxbridge</a></span>). &nbsp;It is only available for applicants who are completing or have completed a degree at an Indian university, however these scholarships are for both undergraduate and graduate students.&nbsp;&nbsp;<a href="http://www.oxbridgeindia.com/scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>6.&nbsp;</strong></span><strong><a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span>EDINBURGH NAPIER UNIVERSITY</span></a></strong>&nbsp;- Scotland, UK<br />This one applies to all countries in the Indian subcontinent and is for both undergraduate and graduate courses. Edinburgh Napier University offers a merit based discount of &pound;2,000 Pounds. &nbsp;<a href="http://www.napier.ac.uk/study/international/funding/Pages/india-scholarships.aspx" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a></p><p><span><strong>7.&nbsp;</strong></span><strong><a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span>SHEFFIELD UNIVERSITY</span></a></strong>&nbsp;- Sheffield, UK<br />Provides merit-based scholarships for undergraduate and graduate programmes across all subjects<span>.</span>&nbsp;<a href="http://www.sheffield.ac.uk/international/countries/asia/south-asia/india/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>8.&nbsp;</strong></span><strong><a href="http://www.india4eu.eu/scholarships" target="_blank"><span>INDIA 4EU II</span></a></strong>&nbsp;- Several Universities across Europe<br />Pioneered by the European Union and involving partner universities in France, Finland, Germany, Italy, Portugal, Spain and Sweden,&nbsp;<span style="text-decoration: underline;"><a href="http://www.india4eu.eu/" target="_blank">the India 4EU II initiative</a></span>&nbsp;is aimed at encouraging Indian students to study, work and live in Europe. &nbsp;The initiative is well funded and allows the successful students tuition fees, expenses for living and travel costs as well as insurance during their time at one of the partner universities. &nbsp;<a href="http://www.india4eu.eu/scholarships" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>9.&nbsp;</strong></span><strong><a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span>TRINITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Valid for undergraduate courses in the faculties of Arts, Humanities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian students scholarships to the tune of&nbsp;&euro;9,000 per annum over a year degree course. &nbsp;<a href="http://www.tcd.ie/international/Indian%20Scholarship.php" target="_blank"><span><span style="text-decoration: underline;">Read more...</span></span></a><br /><br /><span><strong>10.&nbsp;</strong></span><strong><a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/" target="_blank"><span>UNIVERSITY COLLEGE DUBLIN</span></a></strong>&nbsp;- Ireland<br />Another of Ireland and Dublin's finest, the UCD awards one Global Excellence Undergraduate Scholarship which provides the worthy student a substantial 50% towards their tuition fees and is valid for all courses save medicine, radiography and veterinary medicine. &nbsp;UCD also offers a Global Undergraduate Scholarship scheme for undergrads accepted on science, social sciences, arts and business courses. &nbsp;This is all thanks to a &euro;250,000 fund that will allow for 57 Indian students to benefit from scholarships at UCD. &nbsp;<a href="http://www.indianexpress.com/news/university-college-dublin-announces--euro-250000-scholarship-for-indian-students/1094390/"><span><span style="text-decoration: underline;">Read more...</span></span></a></p>]]></description>
	<dc:creator>Priya Singh</dc:creator>
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