<![CDATA[BOL: Software for genome assembly !]]> https://bioinformaticsonline.com/blog/view/42166/software-for-genome-assembly? https://bioinformaticsonline.com/blog/view/42166/software-for-genome-assembly Sun, 30 Aug 2020 09:51:38 -0500 https://bioinformaticsonline.com/blog/view/42166/software-for-genome-assembly <![CDATA[Software for genome assembly !]]> List of bioinformatics tools/Software Website References for genome assembly:

1 Falcon https://github.com/PacificBiosciences/pb-assembly

2 Canu assembler http://canu.readthedocs.io/en/latest/index.html

3 Miniasm assembler https://github.com/lh3/miniasm

4 PBJelly scaffolding tool https://sourceforge.net/projects/pb-jelly/

5 ARCS scaffolding tool https://github.com/bcgsc/arcs

6 Redundans reduction and scaffolding tool https://github.com/Gabaldonlab/redundans

7 Arrow error correction https://github.com/PacificBiosciences/ GenomicConsensus

8 PILON error correction https://github.com/broadinstitute/pilon/wiki

9 BUSCO single copy gene markers http://busco.ezlab.org/

10 Bandage graph assembly viewer https://rrwick.github.io/Bandage/

11 Gepard dotter http://cube.univie.ac.at/gepard

12 MUMmer aligner and plotter http://mummer.sourceforge.net/

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