<![CDATA[BOL: All site bookmarks]]> https://bioinformaticsonline.com/bookmarks/all?offset=110 https://bioinformaticsonline.com/bookmarks/view/44168/environmental-genomics-group-scilifelabkth-stockholm Thu, 01 Dec 2022 01:12:43 -0600 https://bioinformaticsonline.com/bookmarks/view/44168/environmental-genomics-group-scilifelabkth-stockholm <![CDATA[Environmental Genomics Group SciLifeLab/KTH Stockholm]]> Useful Metagenomics resources

Address of the bookmark: https://github.com/envgen

]]> BioStar https://bioinformaticsonline.com/bookmarks/view/44157/onezoom-tree-of-life-explorer Sat, 12 Nov 2022 09:29:08 -0600 https://bioinformaticsonline.com/bookmarks/view/44157/onezoom-tree-of-life-explorer <![CDATA[OneZoom tree of life explorer...]]> An interactive map of the evolutionary links between all living things known to science. Discover your favourites, see which species are under threat, and be amazed by the diversity of life on earth.

 

Address of the bookmark: https://www.onezoom.org/

]]> BioStar https://bioinformaticsonline.com/bookmarks/view/43985/visualise-blast-results Tue, 11 Oct 2022 03:15:10 -0500 https://bioinformaticsonline.com/bookmarks/view/43985/visualise-blast-results <![CDATA[Visualise blast results !]]> Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any software.

 

Address of the bookmark: https://kablammo.wasmuthlab.org/

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43972/covid-spectrum Sun, 25 Sep 2022 18:58:14 -0500 https://bioinformaticsonline.com/bookmarks/view/43972/covid-spectrum <![CDATA[Covid Spectrum !]]> https://cov-spectrum.org/explore/World/AllSamples/

CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced search

Address of the bookmark: https://cov-spectrum.org/

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43970/covid-spectrum Sun, 25 Sep 2022 18:57:50 -0500 https://bioinformaticsonline.com/bookmarks/view/43970/covid-spectrum <![CDATA[Covid Spectrum !]]> https://cov-spectrum.org/explore/World/AllSamples/

CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced search

Address of the bookmark: https://cov-spectrum.org/

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43968/covid-spectrum Sun, 25 Sep 2022 18:56:47 -0500 https://bioinformaticsonline.com/bookmarks/view/43968/covid-spectrum <![CDATA[Covid Spectrum !]]> https://cov-spectrum.org/explore/World/AllSamples/

Address of the bookmark: https://cov-spectrum.org/

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43966/executing-snakemake Sun, 25 Sep 2022 18:34:30 -0500 https://bioinformaticsonline.com/bookmarks/view/43966/executing-snakemake <![CDATA[Executing Snakemake]]> This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to execute, debug, and visualize workflows.

 

https://github.com/snakemake/snakemake/blob/main/docs/tutorial/basics.rst

Address of the bookmark: https://snakemake.readthedocs.io/en/v4.5.1/executable.html

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43957/gfastats-the-swiss-army-knife-for-genome-assembly Thu, 08 Sep 2022 06:03:05 -0500 https://bioinformaticsonline.com/bookmarks/view/43957/gfastats-the-swiss-army-knife-for-genome-assembly <![CDATA[gfastats: The swiss army knife for genome assembly.]]> gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz] conversion. It has been tested in genomes even >100Gbp.

Address of the bookmark: https://github.com/vgl-hub/gfastats

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43952/elastic-blast Tue, 06 Sep 2022 18:14:57 -0500 https://bioinformaticsonline.com/bookmarks/view/43952/elastic-blast <![CDATA[Elastic BLAST !]]> ElasticBLAST is a new way to BLAST large numbers of queries, faster and on the cloud. Here are the top three reasons you should use ElasticBLAST:

1. ElasticBLAST can handle much LARGER queries! 

ElasticBLAST can search query sets that have hundreds to millions of sequences and against BLAST databases of all sizes.

2. ElasticBLAST is FASTER

ElasticBLAST distributes your searches across multiple cloud instances to process them simultaneously. The ability to scale resources in this way allows you to process large numbers of queries in a shorter time than you could with BLAST+.

3. ElasticBLAST is EASY to run on the cloud

ElasticBLAST is easy to set up using our step-by-step instructions (Amazon Web Services (AWS), Google Cloud Platform (GCP)) and allows you to leverage the power of the cloud. Once configured, it manages the software and database installation, handles partitioning of the BLAST workload among the various instances, and deallocates cloud resources when the searches are done.

ElasticBLAST also selects the instance (i.e., machine) type for you based on database size. Of course, you can also choose the instance type manually if you prefer. 

Address of the bookmark: https://blast.ncbi.nlm.nih.gov/doc/elastic-blast/

]]> Abhi https://bioinformaticsonline.com/bookmarks/view/43943/bioinformatics-tutorial Mon, 22 Aug 2022 23:56:22 -0500 https://bioinformaticsonline.com/bookmarks/view/43943/bioinformatics-tutorial <![CDATA[Bioinformatics Tutorial !]]> This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely Unix

Address of the bookmark: https://astrobiomike.github.io/

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