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	<title><![CDATA[BOL: All site bookmarks]]></title>
	<link>https://bioinformaticsonline.com/bookmarks/all?offset=1290</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5816/bio-related-lectures-from-internationally-renowned-scientists</guid>
	<pubDate>Mon, 21 Oct 2013 11:08:11 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5816/bio-related-lectures-from-internationally-renowned-scientists</link>
	<title><![CDATA[Bio related lectures from internationally renowned scientists!!!]]></title>
	<description><![CDATA[<p><span>"iBiology.org was developed to bring the best biology to people throughout the world for free. Started in 2006 by University of California &ndash; San Francisco and Howard Hughes Medical Institute investigator, Professor Ron Vale, iBiology has grown to include over 300 seminars and short talks by the world&rsquo;s leading scientists. Our collection includes talks by many Nobel Laureates and members of the United States National Academy of Sciences. In 2013, we released our first full-length course in Light Microscopy and expanded the educational resources we offer. iBiology is funded by the National Science Foundation, the National Institute of General Medical Sciences, and the Howard Hughes Medical Institute, and supported by the American Society for Cell Biology&nbsp;and the University of California, San Francisco." - See more at: http://www.ibiology.org/about-us.html#sthash.SaCerc1m.dpuf</span></p><p>Address of the bookmark: <a href="http://www.ibiology.org/" rel="nofollow">http://www.ibiology.org/</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5402/key-bioinformatics-scientists</guid>
	<pubDate>Wed, 09 Oct 2013 13:37:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5402/key-bioinformatics-scientists</link>
	<title><![CDATA[Key Bioinformatics Scientists]]></title>
	<description><![CDATA[<p>Address of the bookmark: <a href="http://www.iscb.org/iscb-leadership-a-staff-/officers-and-board-directors" rel="nofollow">http://www.iscb.org/iscb-leadership-a-staff-/officers-and-board-directors</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5350/introduction-of-epigenomics</guid>
	<pubDate>Sun, 06 Oct 2013 04:59:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5350/introduction-of-epigenomics</link>
	<title><![CDATA[Introduction of Epigenomics]]></title>
	<description><![CDATA[<ul>
<li><a href="http://www.genome.gov/27532724#al-1">What is the epigenome?</a></li>
<li><a href="http://www.genome.gov/27532724#al-2">What does the epigenome do?</a></li>
<li><a href="http://www.genome.gov/27532724#al-3">What makes up the epigenome?</a></li>
<li><a href="http://www.genome.gov/27532724#al-4">Is the epigenome inherited?</a></li>
<li><a href="http://www.genome.gov/27532724#al-5">What is imprinting?</a></li>
<li><a href="http://www.genome.gov/27532724#al-6">Can the epigenome change?</a></li>
<li><a href="http://www.genome.gov/27532724#al-7">What makes the epigenome change?</a></li>
<li><a href="http://www.genome.gov/27532724#al-8">How do changes in the epigenome contribute to cancer?</a></li>
<li><a href="http://www.genome.gov/27532724#al-9">How are researchers exploring the epigenome?</a></li>
</ul><p>Address of the bookmark: <a href="http://www.genome.gov/27532724" rel="nofollow">http://www.genome.gov/27532724</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5180/homolog-a-bioinformatics-blog</guid>
	<pubDate>Mon, 30 Sep 2013 03:58:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5180/homolog-a-bioinformatics-blog</link>
	<title><![CDATA[Homolog -A Bioinformatics Blog]]></title>
	<description><![CDATA[<p>Frontier in Bioinformatics</p><p>Address of the bookmark: <a href="http://www.homolog.us/blogs/" rel="nofollow">http://www.homolog.us/blogs/</a></p>]]></description>
	<dc:creator>MineshJ</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture</guid>
	<pubDate>Fri, 27 Sep 2013 04:24:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture</link>
	<title><![CDATA[Molecular Genetics Lecture]]></title>
	<description><![CDATA[<p><span>"Robert Sapolsky makes interdisciplinary connections between behavioral biology and molecular genetic influences. He relates protein synthesis and point mutations to microevolutionary change, and discusses conflicting theories of gradualism and punctuated equilibrium and the influence of epigenetics on development theories."&nbsp;</span></p>
<p><span>"<span><strong>Robert Sapolsky</strong> is an American neuroendocrinologist, professor of biology, neuroscience, and neurosurgery at Stanford University, researcher and author" ----Wikipedia</span></span></p><p>Address of the bookmark: <a href="http://www.youtube.com/watch?v=_dRXA1_e30o" rel="nofollow">http://www.youtube.com/watch?v=_dRXA1_e30o</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial</guid>
	<pubDate>Thu, 26 Sep 2013 16:36:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial</link>
	<title><![CDATA[Collection of molecular modelling and drug design related tutorial ...]]></title>
	<description><![CDATA[<p>The Rosetta macromolecular modeling, prediction, and design software suite is supported by a large developer community and enjoys a diverse user base. Each year Rosetta developers and users from academia and industry meet to discuss improvements and new code, as well as exciting, emerging applications.</p>
<p>This Collection draws from material presented at RosettaCon 2012. The Collection is meant to both highlight new scientific developments within the Rosetta community and provide a rigorously reproducible workflow for each protocol. This year's Collection highlights exciting advances that increase the usability of Rosetta, improve current methods, and introduce completely new protocols.</p>
<p>More @ http://www.ploscollections.org/article/browse/issue/info:doi/10.1371/issue.pcol.v02.i21</p>
<blockquote>
<p>Please add your useful web-link or pdf-link below in comment section...</p>
</blockquote><p>Address of the bookmark: <a href="http://www.ploscollections.org/article/browse/issue/info:doi/10.1371/issue.pcol.v02.i21" rel="nofollow">http://www.ploscollections.org/article/browse/issue/info:doi/10.1371/issue.pcol.v02.i21</a></p>]]></description>
	<dc:creator>Shikha Logwani</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4357/flow-cytometry-data-analysis</guid>
	<pubDate>Sat, 07 Sep 2013 18:09:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4357/flow-cytometry-data-analysis</link>
	<title><![CDATA[Flow cytometry data analysis]]></title>
	<description><![CDATA[<p>Flow cytometry&nbsp;is a&nbsp;biophysical laser based instrument used in various purposes like&nbsp;cell counting,&nbsp;cell sorting,&nbsp;biomarker&nbsp;detection, etc.</p>
<p>More on this:</p>
<p><a href="http://bioinformatics.ca/workshops/2013/flow-cytometry-data-analysis-using-r-2013">http://bioinformatics.ca/workshops/2013/flow-cytometry-data-analysis-using-r-2013</a></p>
<p><a href="http://pyvideo.org/video/1234/fcm-a-python-library-for-flow-cytometry">http://pyvideo.org/video/1234/fcm-a-python-library-for-flow-cytometry</a></p><p>Address of the bookmark: <a href="http://www.ehu.es/biologiacomputacional/reprints/nmeth.2365.pdf" rel="nofollow">http://www.ehu.es/biologiacomputacional/reprints/nmeth.2365.pdf</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4356/metabolomics-and-proteomics</guid>
	<pubDate>Sat, 07 Sep 2013 17:39:49 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4356/metabolomics-and-proteomics</link>
	<title><![CDATA[Metabolomics and Proteomics]]></title>
	<description><![CDATA[<p>Metabolomics- A realm of small molecules</p>
<p>For detail lectures on Metabolomics:</p>
<p><a href="https://www.bits.vib.be/index.php/training/117-mass-spec-data-processing#download">https://www.bits.vib.be/index.php/training/117-mass-spec-data-processing#download</a></p>
<p><a href="http://compomics.com/bioinformatics-for-proteomics/">http://compomics.com/bioinformatics-for-proteomics/</a></p>
<p><a href="http://bioinformatics.ca/workshops/2013/informatics-and-statistics-metabolomics-2013">http://bioinformatics.ca/workshops/2013/informatics-and-statistics-metabolomics-2013</a></p>
<p><a href="http://fiehnlab.ucdavis.edu/staff/kind/Teaching">http://fiehnlab.ucdavis.edu/staff/kind/Teaching</a></p><p>Address of the bookmark: <a href="http://www.uab.edu/proteomics/pdf_files/2008/Class%2002-12-08.pdf" rel="nofollow">http://www.uab.edu/proteomics/pdf_files/2008/Class%2002-12-08.pdf</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4209/enzyme-portal</guid>
	<pubDate>Tue, 03 Sep 2013 18:06:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4209/enzyme-portal</link>
	<title><![CDATA[Enzyme Portal]]></title>
	<description><![CDATA[<p><span>Enzyme Portal-&nbsp;To look for information about the biology of a protein with enzymatic activity.</span></p>
<p><span>The enzyme portal integrates many resources, most of them hosted by EBI and also external ones such as BioPortal. Its main goal is to provide information about enzymes in a suitable format, with a usable interface designed for intended users. Instead of reinventing the wheel, it makes use of available and reliable resources to that end.</span></p>
<p><span><strong>Related Literature</strong>:</span></p>
<p><span><a href="http://nar.oxfordjournals.org/content/41/D1/D773.full">http://nar.oxfordjournals.org/content/41/D1/D773.full</a></span></p>
<p><span><a href="http://www.biomedcentral.com/1471-2105/14/103">http://www.biomedcentral.com/1471-2105/14/103</a></span></p><p>Address of the bookmark: <a href="http://www.ebi.ac.uk/enzymeportal/" rel="nofollow">http://www.ebi.ac.uk/enzymeportal/</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4208/latest-paper-on-comparison-of-mapping-tools</guid>
	<pubDate>Tue, 03 Sep 2013 18:00:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4208/latest-paper-on-comparison-of-mapping-tools</link>
	<title><![CDATA[Latest paper on comparison of mapping tools]]></title>
	<description><![CDATA[<p>A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013.</p>
<p>http://bmi.osu.edu/hpc/software/benchmark/</p>
<p><a href="http://bmi.osu.edu/hpc/software/pmap/pmap.html">http://bmi.osu.edu/hpc/software/pmap/pmap.html</a></p>
<p>Other similiar papers:</p>
<p><a href="http://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022">http://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022</a></p>
<p><a href="http://bioinformatics.oxfordjournals.org/content/28/24/3169">http://bioinformatics.oxfordjournals.org/content/28/24/3169</a></p>
<p>Some new Mapping tool links:<a href="http://bmi.osu.edu/hpc/software/benchmark/"></a></p>
<p><strong>GSNAP</strong></p>
<p><a href="http://research-pub.gene.com/gmap/"></a><a href="http://research-pub.gene.com/gmap/">http://research-pub.gene.com/gmap/</a></p>
<p><strong>RMAP</strong></p>
<p><a href="http://rulai.cshl.edu/rmap/"></a><a href="http://rulai.cshl.edu/rmap/">http://rulai.cshl.edu/rmap/</a></p>
<p><strong>mrsFAST</strong></p>
<p><a href="http://mrsfast.sourceforge.net/Home"></a><a href="http://mrsfast.sourceforge.net/Home">http://mrsfast.sourceforge.net/Home</a></p>
<p><a href="http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/">http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/</a></p>
<p><strong>BFAST</strong></p>
<p><a href="http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page">http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page</a></p>
<p><strong>SHRiMP (for&nbsp;AB SOLiD color-space reads)</strong></p>
<p><a href="http://compbio.cs.toronto.edu/shrimp/">http://compbio.cs.toronto.edu/shrimp/</a></p>
<p><strong>RazerA 3</strong></p>
<p><a href="http://www.seqan.de/projects/razers/">http://www.seqan.de/projects/razers/</a></p><p>Address of the bookmark: <a href="http://www.biomedcentral.com/1471-2105/14/184" rel="nofollow">http://www.biomedcentral.com/1471-2105/14/184</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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