<![CDATA[BOL: New RNA Seq tool]]> https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool? https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool Fri, 25 Apr 2014 10:59:04 -0500 https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool <![CDATA[New RNA Seq tool]]> "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy."

Tool link:

http://www.cs.cmu.edu/~ckingsf/software/sailfish/

Address of the bookmark: http://www.genengnews.com/gen-news-highlights/lightweight-algorithms-sail-through-rna-sequencing-data/81249765/

]]> Rahul Agarwal https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1522 Wed, 09 Jul 2014 15:55:19 -0500 https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1522 <![CDATA[Comment by Rahul Agarwal]]> OmiRas, a web server (from GenXPro Frankfurt) for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions.

http://tools.genxpro.net/omiras

]]> Rahul Agarwal https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1521 Wed, 09 Jul 2014 05:13:17 -0500 https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1521 <![CDATA[Comment by Jitendra Narayan]]> RNA-Seq: a revolutionary tool for transcriptomics http://www.nature.com/nrg/journal/v10/n1/abs/nrg2484.html

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1520 Wed, 09 Jul 2014 05:06:12 -0500 https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1520 <![CDATA[Comment by Poonam Mahapatra]]> GenePattern offers a set of tools to support a wide variety of RNA-seq analyses, including short-read mapping, identification of splice junctions, transcript and isoform detection, quantitation, differential expression, quality control metrics, visualization, and file utilities. http://www.broadinstitute.org/cancer/software/genepattern/modules/RNA-seq

]]> Poonam Mahapatra https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1519 Wed, 09 Jul 2014 04:59:44 -0500 https://bioinformaticsonline.com/bookmarks/view/10243/new-rna-seq-tool#item-annotation-1519 <![CDATA[Comment by John Parker]]> List of RNA-Seq bioinformatics tools http://en.wikipedia.org/wiki/List_of_RNA-Seq_bioinformatics_tools

]]> John Parker