<![CDATA[BOL: liftover]]> https://bioinformaticsonline.com/bookmarks/view/26322/liftover? https://bioinformaticsonline.com/bookmarks/view/26322/liftover Mon, 08 Feb 2016 15:45:03 -0600 https://bioinformaticsonline.com/bookmarks/view/26322/liftover <![CDATA[liftover]]> Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly.

More at https://github.com/aaronwolen/liftover

https://www.bioconductor.org/help/workflows/liftOver/

Address of the bookmark: https://github.com/aaronwolen/liftover

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/26322/liftover#item-annotation-2330 Mon, 08 Feb 2016 15:54:26 -0600 https://bioinformaticsonline.com/bookmarks/view/26322/liftover#item-annotation-2330 <![CDATA[Comment by Rahul Nayak]]> This tool converts genome coordinates and genome annotation files between assemblies.  The input data can be pasted into the text box, or uploaded from a file.  If a pair of assemblies cannot be selected from the pull-down menus, a direct lift between them is unavailable.

https://genome.ucsc.edu/cgi-bin/hgLiftOver

]]> Rahul Nayak