<![CDATA[BOL: CrossMap]]> https://bioinformaticsonline.com/bookmarks/view/26325/crossmap? https://bioinformaticsonline.com/bookmarks/view/26325/crossmap Mon, 08 Feb 2016 15:47:00 -0600 https://bioinformaticsonline.com/bookmarks/view/26325/crossmap <![CDATA[CrossMap]]> CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)).

It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.

CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for aligning sequences to reference genome.

We do not recommend using CrossMap to convert genome coordinates between species.

More at http://crossmap.sourceforge.net/

Address of the bookmark: http://crossmap.sourceforge.net/

]]> Jitendra Narayan