<![CDATA[BOL: RACA: Reference-Assisted Chromosome Assembly]]> https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly? https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly Wed, 06 Apr 2016 09:29:50 -0500 https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly <![CDATA[RACA: Reference-Assisted Chromosome Assembly]]> Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end reads.

http://www.ncbi.nlm.nih.gov/pubmed/23307812

http://bioen-compbio.bioen.illinois.edu/RACA/

Address of the bookmark: http://bioen-compbio.bioen.illinois.edu/RACA/

]]> Priya Singh https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly#item-annotation-2673 Mon, 03 Oct 2016 04:45:17 -0500 https://bioinformaticsonline.com/bookmarks/view/26911/raca-reference-assisted-chromosome-assembly#item-annotation-2673 <![CDATA[Comment by Jit]]> Chromosomer – a reference-based genome arrangement tool, which rapidly builds chromosomes from genome contigs or scaffolds using their alignments to a reference genome of a closely related species. Chromosomer does not require mate-pair libraries and it offers a number of auxiliary tools that implement common operations accompanying the genome assembly process.

More at http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0141-6

Script at https://github.com/gtamazian/chromosomer

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