<![CDATA[BOL: CrossMap]]> https://bioinformaticsonline.com/bookmarks/view/29018/crossmap? https://bioinformaticsonline.com/bookmarks/view/29018/crossmap Mon, 05 Sep 2016 04:07:38 -0500 https://bioinformaticsonline.com/bookmarks/view/29018/crossmap <![CDATA[CrossMap]]>
  • CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)).
  • It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.
  • CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for aligning sequences to reference genome.
  • We do not recommend using CrossMap to convert genome coordinates between species.

    • Address of the bookmark: http://crossmap.sourceforge.net/

    ]]>     Abhimanyu Singh