<![CDATA[BOL: HGA]]> https://bioinformaticsonline.com/bookmarks/view/29995/hga? https://bioinformaticsonline.com/bookmarks/view/29995/hga Tue, 29 Nov 2016 07:25:53 -0600 https://bioinformaticsonline.com/bookmarks/view/29995/hga <![CDATA[HGA]]> HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads dataset into a given number of partitions. 2. Assembling each partitions using a pre-specified assembler (Velvet or SPAdes in this version) and using a given kmer size. 3. Merging all the assemblies of the partition. 4. Combining all the assemblies of the partition (using velvet with kmer value of 31). 5. Finaly, re-assembling the whole dataset with the merged contigs or the combined contigs, using a given kmer size.

https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA

Address of the bookmark: https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA

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