<![CDATA[BOL: Minia]]> https://bioinformaticsonline.com/bookmarks/view/30074/minia? https://bioinformaticsonline.com/bookmarks/view/30074/minia Thu, 08 Dec 2016 05:07:00 -0600 https://bioinformaticsonline.com/bookmarks/view/30074/minia <![CDATA[Minia]]> Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Download

Minia 2.0.7 Linux 64-bits binaries (Source code) (Legacy codebase)

For the impatient

A typical Minia command line looks like:

./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_prefix

Type

./minia

for a quick explanation of the parameters.

For more information, refer to the manual.

KmerGenie can be used to determine the best k-mer size, minimum abundance of correct k-mers, and genome size estimation for your dataset.

 

Address of the bookmark: http://minia.genouest.org/

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