BOL: R and Bioconductor Tutorial

R and Bioconductor Tutorial

Jitendra Narayan — Fri, 23 Aug 2013 08:23:59 -0500

This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: load a table, plot some graphs, and perform some basic statistics. More extensive tutorials can be found on the project website and via bioconductor (not covered here).

You can add more tutorial links in comments if found new pages.

Address of the bookmark: http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual

Comment by Alok Prajapati

Alok Prajapati — Sat, 12 Apr 2014 21:52:04 -0500

NetWorkSpaces for R http://nws-r.sourceforge.net/

Comment by Alok Prajapati

Alok Prajapati — Sat, 12 Apr 2014 21:42:28 -0500

R/parallel – speeding up bioinformatics analysis with R http://www.biomedcentral.com/1471-2105/9/390

Comment by Alok Prajapati

Alok Prajapati — Sat, 12 Apr 2014 21:40:17 -0500

R tutorial stuff at http://math.illinoisstate.edu/dhkim/rstuff/rtutor.html

Comment by Alok Prajapati

Alok Prajapati — Sat, 12 Apr 2014 21:39:24 -0500

R for Bioinformatics http://www.evolution.unibas.ch/teaching/evol_genetics/1_Bioinformatics/lecture_notes/HS2013_9_R.pdf

Comment by Alok Prajapati

Alok Prajapati — Sat, 12 Apr 2014 21:37:24 -0500

APE: Analyses of Phylogenetics and Evolution in R language http://bioinformatics.oxfordjournals.org/content/20/2/289.abstract

Comment by Aaryan Lokwani

Aaryan Lokwani — Sat, 05 Apr 2014 11:35:16 -0500

Little Book of R for Bioinformatics by Avril Coghlan, Wellcome Trust Sanger Institute, Cambridge, U.K. http://a-little-book-of-r-for-bioinformatics.readthedocs.org/en/latest/

Comment by Aaryan Lokwani

Aaryan Lokwani — Sat, 05 Apr 2014 11:32:44 -0500

Sean Davis tutorial is really useful http://watson.nci.nih.gov/~sdavis/tutorials/

Comment by Rahul Nayak

Rahul Nayak — Sat, 05 Apr 2014 11:27:52 -0500

Resources to help you learn and use R http://www.ats.ucla.edu/stat/r/

Comment by Rahul Nayak

Rahul Nayak — Sat, 05 Apr 2014 11:26:07 -0500

Yet another useful R tutorial at http://www.nceas.ucsb.edu/files/scicomp/Dloads/RProgramming/BestFirstRTutorial.pdf

Comment by Neel

Neel — Thu, 27 Mar 2014 20:49:42 -0500

A web application framework for R. http://shiny.rstudio.com/ It turn your analyses into interactive web applications. No HTML, CSS, or JavaScript knowledge required :)

Comment by Neel

Neel — Thu, 27 Mar 2014 20:43:47 -0500

IDE for R http://www.rstudio.com/ide/

It is available in open source and commercial editions and runs on the desktop (Windows, Mac, and Linux) or over the web with RStudio Server.

Comment by Rahul Nayak

Rahul Nayak — Mon, 17 Mar 2014 17:04:01 -0500

Rattle: A Graphical User Interface for Data Mining using R http://rattle.togaware.com/

Comment by Rahul Nayak

Rahul Nayak — Sat, 15 Mar 2014 03:03:48 -0500

A self learning R tutorial at http://www.nceas.ucsb.edu/files/scicomp/Dloads/RProgramming/BestFirstRTutorial.pdf

Comment by Rahul Nayak

Rahul Nayak — Thu, 13 Mar 2014 16:42:02 -0500

Useful collection of an R "meta" book can be found at http://www.r-bloggers.com/an-r-meta-book/

Comment by Prachi Taneja

Prachi Taneja — Wed, 12 Mar 2014 10:26:14 -0500

SimpleR tutorials is very lucid and practical for general data analysis with R. http://cran.r-project.org/doc/contrib/Verzani-SimpleR.pdf

Comment by Prachi Taneja

Prachi Taneja — Wed, 12 Mar 2014 10:20:18 -0500

Some of useful collection of R tutorial links are available at http://cran.r-project.org/other-docs.html

Comment by Jit

Jit — Tue, 11 Mar 2014 20:20:58 -0500

You can also find list of several online R tutorial around the world at http://pairach.com/2012/02/26/r-tutorials-from-universities-around-the-world/

Comment by Poonam Mahapatra

Poonam Mahapatra — Tue, 11 Mar 2014 20:14:25 -0500

The illinois R tutorial http://math.illinoisstate.edu/dhkim/rstuff/rtutor.html

The basic stats with R at http://ww2.coastal.edu/kingw/statistics/R-tutorials/

Comment by Rahul Nayak

Rahul Nayak — Tue, 11 Mar 2014 20:07:40 -0500

The R basic tutorial at http://www.cyclismo.org/tutorial/R/

Comment by Rahul Nayak

Rahul Nayak — Mon, 10 Mar 2014 03:48:41 -0500

R and BioConductor tutorial for beginners http://jura.wi.mit.edu/bio/education/R2011/

Comment by Archana Malhotra

Archana Malhotra — Thu, 28 Nov 2013 18:47:26 -0600

You can find useful R video tutorial @ http://www.youtube.com/watch?v=iffR3fWv4xw&list=PLOU2XLYxmsIK9qQfztXeybpHvru-TrqAP

Comment by Mukesh Jha

Mukesh Jha — Sun, 10 Nov 2013 12:50:54 -0600

RGL: A R-library for 3D visualization with OpenGL http://rgl.neoscientists.org/arc/doc/RGL_INTERFACE03.pdf

R by example http://www.mayin.org/ajayshah/KB/R/

Comment by Radha Agarkar

Radha Agarkar — Fri, 25 Oct 2013 08:26:44 -0500

useR! 2013 R / Bioconductor for Analysis and Comprehension of High-Throughput Genomic Data http://bioconductor.org/help/course-materials/2013/useR2013/Bioconductor-tutorial.pdf

Comment by Surajeet

Surajeet — Fri, 18 Oct 2013 10:38:13 -0500

Introduction to Feature selection for bioinformaticians using R, correlation matrix filters, PCA & backward selection http://computationalproteomic.blogspot.co.uk/2013/10/introduction-to-feature-selection-for.html?

Comment by Jit

Jit — Mon, 30 Sep 2013 19:34:36 -0500

R tutorial by Division of Molecular Biology, Netherlands Cancer Institute http://bioinformatics.nki.nl/courses/Rstat_12_I/texts/resources/R-intro.pdf