BOL: R and Bioconductor Tutorial

R and Bioconductor Tutorial

Jitendra Narayan — Fri, 23 Aug 2013 08:23:59 -0500

This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: load a table, plot some graphs, and perform some basic statistics. More extensive tutorials can be found on the project website and via bioconductor (not covered here).

You can add more tutorial links in comments if found new pages.

Address of the bookmark: http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual

Comment by Rahul Nayak

Rahul Nayak — Mon, 16 Sep 2013 05:40:13 -0500

Applied Statistics for Bioinformatics using R @ http://cran.r-project.org/doc/contrib/Krijnen-IntroBioInfStatistics.pdf

Comment by Agampreet Kaur

Agampreet Kaur — Sat, 14 Sep 2013 13:05:13 -0500

DotPlot for Protein Sequences using R @ http://www.biogem.org/blog/dotplot-for-protein-sequences-using-r/

Frequency Plot for Protein Sequences using R @ http://www.biogem.org/blog/frequency-plot-for-protein-sequences-using-r/

Comment by Neel

Neel — Wed, 28 Aug 2013 10:16:30 -0500

The book "Applied Statistics for Bioinformatics using R" provide an introduction into statistics in order to solve some problems of bioinformatics.

http://cran.r-project.org/doc/contrib/Krijnen-IntroBioInfStatistics.pdf

Comment by Jit

Jit — Wed, 28 Aug 2013 10:12:33 -0500

In programming sector we generally rely on google for syntex, logic and other support. Now for R language related problems you can search on http://rseek.org/

Comment by Jit

Jit — Wed, 28 Aug 2013 10:07:36 -0500

This site’s mission is to analyze the world of analytics, with a special focus on R. R is free, open source, analytic software that is similar to the “big three” commercial packages: SAS, SPSS and Stata.

Find detailed and helpful tutorial at

http://r4stats.com/

Comment by Abhimanyu Singh

Abhimanyu Singh — Wed, 28 Aug 2013 09:11:31 -0500

R-tutor.com provide detail tutorial on R http://www.r-tutor.com/

Comment by Shreya Ganguli

Shreya Ganguli — Wed, 28 Aug 2013 06:19:12 -0500

For video R tutorial you can visit youtube http://www.youtube.com/playlist?list=PL69A9CCD816A5F3A5

Comment by Shreya Ganguli

Shreya Ganguli — Wed, 28 Aug 2013 06:16:46 -0500

My favourate place to learn R http://www.cyclismo.org/tutorial/R/

Comment by Shreya Ganguli

Shreya Ganguli — Wed, 28 Aug 2013 06:15:18 -0500

Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. http://www.bioconductor.org/packages/2.12/bioc/html/Biostrings.html

Comment by Jit

Jit — Mon, 26 Aug 2013 17:16:58 -0500

The interactive interface to learn R language http://tryr.codeschool.com/

Comment by Jitendra Narayan

Jitendra Narayan — Mon, 26 Aug 2013 17:13:55 -0500

HT Sequence Analysis with R and Bioconductor tutorial at http://manuals.bioinformatics.ucr.edu/home/ht-seq

Comment by Jitendra Narayan

Jitendra Narayan — Sun, 25 Aug 2013 04:31:50 -0500

I found one R package SeqinR very handy in statistical computing of NGS data.

SeqinR 2.0-1: a contributed package to the project for statistical computing devoted to biological sequences retrieval and analysis

Link :http://seqinr.r-forge.r-project.org/seqinr_2_0-1.pdf

Comment by Poonam Mahapatra

Poonam Mahapatra — Fri, 23 Aug 2013 08:47:45 -0500

You can also look at this R tutorial http://www.burns-stat.com/pages/Tutor/R_inferno.pdf

http://www.nceas.ucsb.edu/files/scicomp/Dloads/RProgramming/BestFirstRTutorial.pdf