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	<title><![CDATA[BOL: BRIG]]></title>
	<link>https://bioinformaticsonline.com/bookmarks/view/30976/brig?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30976/brig</guid>
	<pubDate>Thu, 16 Feb 2017 13:14:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30976/brig</link>
	<title><![CDATA[BRIG]]></title>
	<description><![CDATA[<p>BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:<a href="http://sourceforge.net/projects/brig">http://sourceforge.net/projects/brig</a></p>
<p>If you have any questions or comments, post them on&nbsp;<a href="http://sourceforge.net/tracker/?group_id=328245">one of the trackers</a>&nbsp;on BRIG&rsquo;s SourceForge page:<a href="http://sourceforge.net/tracker/?group_id=328245">http://sourceforge.net/tracker/?group_id=328245</a>.</p>
<p>Features:</p>
<ul>
<li>Images show similarity between a central reference sequence and other sequences as concentric rings.</li>
<li>BRIG will perform all BLAST comparisons and file parsing automatically via a simple GUI.</li>
<li>Contig boundaries and read coverage can be displayed for draft genomes; customized graphs and annotations can be displayed.</li>
<li>Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data.</li>
<li>BRIG also accepts SAM-formatted read-mapping files enabling genomic regions present in unassembled sequence data from multiple samples to be compared simultaneously</li>
</ul>
<p>&nbsp;</p><p>Address of the bookmark: <a href="http://brig.sourceforge.net/" rel="nofollow">http://brig.sourceforge.net/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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